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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0636940 |
| Transcript ID | Lj2g3v0636940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g05600-like [Glycine max] gi|356531124|ref|XP_003534128.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 251 | 251 | 6.20E-242 | – | |
| PANTHER | 1 | 251 | 251 | 6.20E-242 | – | |
| ProSiteProfiles | 44 | 78 | 35 | 8.594 | ||
| TIGRFAM | 47 | 78 | 32 | 2.20E-04 | ||
| Pfam | 48 | 76 | 29 | 0.082 | ||
| ProSiteProfiles | 79 | 113 | 35 | 7.366 | ||
| Pfam | 85 | 111 | 27 | 0.043 | ||
| Gene3D | 85 | 110 | 26 | 4.40E-09 | ||
| Gene3D | 148 | 261 | 114 | 4.40E-09 | ||
| ProSiteProfiles | 150 | 184 | 35 | 10.183 | ||
| Pfam | 151 | 198 | 48 | 6.50E-11 | ||
| TIGRFAM | 154 | 185 | 32 | 2.80E-05 | ||
| ProSiteProfiles | 185 | 215 | 31 | 7.947 | ||
| TIGRFAM | 188 | 212 | 25 | 0.0024 | ||
| ProSiteProfiles | 224 | 258 | 35 | 11.893 | ||
| Pfam | 226 | 256 | 31 | 1.70E-05 | ||
| TIGRFAM | 226 | 257 | 32 | 8.20E-06 | ||
| ProSiteProfiles | 259 | 294 | 36 | 5.185 | ||
| Pfam | 282 | 404 | 123 | 1.70E-07 | ||
| PANTHER | 288 | 499 | 212 | 6.20E-242 | – | |
| PANTHER | 288 | 499 | 212 | 6.20E-242 | – | |
| ProSiteProfiles | 295 | 329 | 35 | 9.712 | ||
| ProSiteProfiles | 330 | 365 | 36 | 8.057 | ||
| ProSiteProfiles | 366 | 396 | 31 | 6.675 | ||
| Gene3D | 367 | 498 | 132 | 4.40E-09 | ||
| ProSiteProfiles | 402 | 436 | 35 | 9.821 | ||
| Pfam | 405 | 429 | 25 | 0.082 | ||
| TIGRFAM | 405 | 430 | 26 | 0.0027 | ||
| ProSiteProfiles | 437 | 471 | 35 | 10.205 | ||
| TIGRFAM | 440 | 471 | 32 | 2.90E-04 | ||
| Pfam | 440 | 468 | 29 | 4.50E-04 | ||
| ProSiteProfiles | 472 | 502 | 31 | 6.303 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0636940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0636940.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.