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Lj2g3v0780560.1

Overview

Field Value
Gene ID Lj2g3v0780560
Transcript ID Lj2g3v0780560.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 35-like [Glycine max] gi|356505847|ref|XP_003521701.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031:SF266
1 48 48 0 –
PANTHER
PTHR24031
1 48 48 0 –
Coils
Coil
74 94 21 – –
PANTHER
PTHR24031
105 584 480 0 –
PANTHER
PTHR24031:SF266
105 584 480 0 –
Gene3D
G3DSA:3.40.50.300
136 372 237 5.60E-76
IPR027417
ProSiteProfiles
PS51195
152 180 29 10.153
IPR014014
CDD
cd00268
154 368 215 4.68E-80 –
SMART
SM00487
171 382 212 1.80E-56
IPR014001
Pfam
PF00270
176 355 180 2.40E-46
IPR011545
ProSiteProfiles
PS51192
183 367 185 29.283
IPR014001
SUPERFAMILY
SSF52540
228 511 284 4.60E-68
IPR027417
Gene3D
G3DSA:3.40.50.300
373 536 164 2.70E-50
IPR027417
CDD
cd00079
378 506 129 8.32E-37 –
ProSiteProfiles
PS51194
378 538 161 23.455
IPR001650
Pfam
PF00271
391 498 108 8.70E-31
IPR001650
SMART
SM00490
417 498 82 8.60E-34
IPR001650
Pfam
PF00098
555 571 17 1.80E-04
IPR001878
SUPERFAMILY
SSF57756
555 576 22 2.09E-05
IPR001878
SMART
SM00343
555 571 17 0.0053
IPR001878
Gene3D
G3DSA:4.10.60.10
556 576 21 3.30E-05
IPR001878
ProSiteProfiles
PS50158
556 571 16 9.109
IPR001878

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v0780560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0780560.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.