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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0878950 |
| Transcript ID | Lj2g3v0878950.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502164060|ref|XP_004513035.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 596 | 589 | 0 | – | |
| PANTHER | 8 | 596 | 589 | 0 | ||
| Gene3D | 9 | 122 | 114 | 3.40E-26 | ||
| SUPERFAMILY | 12 | 122 | 111 | 3.40E-13 | ||
| Hamap | 13 | 596 | 584 | 22.302 | ||
| SMART | 13 | 106 | 94 | 2.70E-15 | ||
| Pfam | 14 | 106 | 93 | 7.30E-15 | ||
| TIGRFAM | 27 | 595 | 569 | 2.20E-125 | ||
| SUPERFAMILY | 131 | 474 | 344 | 1.88E-78 | – | |
| Gene3D | 133 | 471 | 339 | 9.20E-100 | ||
| Pfam | 133 | 466 | 334 | 5.20E-110 | ||
| PRINTS | 134 | 149 | 16 | 2.10E-20 | ||
| CDD | 134 | 402 | 269 | 1.16E-63 | – | |
| ProSitePatterns | 142 | 153 | 12 | – | ||
| PRINTS | 149 | 165 | 17 | 2.10E-20 | ||
| PRINTS | 317 | 338 | 22 | 2.10E-20 | ||
| Gene3D | 474 | 595 | 122 | 6.70E-34 | ||
| SUPERFAMILY | 474 | 595 | 122 | 1.77E-31 | ||
| SMART | 480 | 596 | 117 | 1.50E-28 | ||
| Pfam | 480 | 595 | 116 | 7.50E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Arginine-tRNA ligase activity | Catalysis of the reaction: ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Arginyl-tRNA aminoacylation | The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. The arginyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of an alanine accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of Lj2g3v0878950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0878950.1, powered by CORGI.
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