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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0915030 |
| Transcript ID | Lj2g3v0915030.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357455473|ref|XP_003598017.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 44 | 447 | 404 | 8.50E-238 | – | |
| Gene3D | 59 | 94 | 36 | 6.70E-14 | ||
| Pfam | 61 | 108 | 48 | 8.00E-08 | ||
| ProSiteProfiles | 62 | 96 | 35 | 9.284 | ||
| TIGRFAM | 65 | 90 | 26 | 1.30E-05 | ||
| ProSiteProfiles | 99 | 133 | 35 | 5.612 | ||
| Gene3D | 133 | 201 | 69 | 6.70E-14 | ||
| ProSiteProfiles | 134 | 164 | 31 | 7.618 | ||
| TIGRFAM | 139 | 167 | 29 | 2.10E-04 | ||
| SUPERFAMILY | 145 | 189 | 45 | 5.56E-07 | ||
| Pfam | 164 | 211 | 48 | 2.20E-10 | ||
| ProSiteProfiles | 165 | 199 | 35 | 12.397 | ||
| TIGRFAM | 167 | 200 | 34 | 3.00E-08 | ||
| ProSiteProfiles | 236 | 266 | 31 | 8.451 | ||
| Gene3D | 237 | 304 | 68 | 6.70E-14 | ||
| Pfam | 266 | 314 | 49 | 2.90E-08 | ||
| ProSiteProfiles | 267 | 301 | 35 | 10.402 | ||
| TIGRFAM | 269 | 303 | 35 | 3.60E-06 | ||
| SUPERFAMILY | 282 | 318 | 37 | 5.56E-07 | ||
| ProSiteProfiles | 303 | 333 | 31 | 6.741 | ||
| ProSiteProfiles | 339 | 369 | 31 | 6.982 | ||
| Pfam | 343 | 367 | 25 | 0.038 | ||
| ProSiteProfiles | 371 | 401 | 31 | 6.555 | ||
| Gene3D | 372 | 424 | 53 | 6.70E-14 | ||
| SUPERFAMILY | 378 | 424 | 47 | 5.56E-07 | ||
| ProSiteProfiles | 405 | 439 | 35 | 7.311 | ||
| MobiDBLite | 427 | 450 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0915030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0915030.1, powered by CORGI.
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