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Lj2g3v0922620.1

Overview

Field Value
Gene ID Lj2g3v0922620
Transcript ID Lj2g3v0922620.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 3-like [Cicer arietinum] gi|502090462|ref|XP_004489236.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315:SF120
1 329 329 2.60E-163 –
PANTHER
PTHR23315
1 329 329 2.60E-163 –
SUPERFAMILY
SSF48371
5 313 309 3.07E-36
IPR016024
Gene3D
G3DSA:1.25.10.10
5 304 300 9.30E-38
IPR011989
SMART
SM00185
28 68 41 2.2
IPR000225
Pfam
PF00514
29 67 39 1.60E-04
IPR000225
CDD
cd00020
35 153 119 1.45E-13 –
SMART
SM00185
70 110 41 0.78
IPR000225
ProSiteProfiles
PS50176
81 123 43 8.767
IPR000225
SMART
SM00185
111 153 43 0.045
IPR000225
CDD
cd00020
117 239 123 3.43E-06 –
ProSiteProfiles
PS50176
122 166 45 10.167
IPR000225
SMART
SM00185
154 196 43 5.2
IPR000225
ProSiteProfiles
PS50176
165 200 36 8.732
IPR000225
SMART
SM00185
198 239 42 420
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v0922620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0922620.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.