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Lj2g3v0949390.1

Overview

Field Value
Gene ID Lj2g3v0949390
Transcript ID Lj2g3v0949390.1
Lotus japonicus genome version MG20 v3.0
Description Myb protein [Medicago truncatula] gi|357504247|ref|XP_003622412.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
149 276 128 9.50E-55 –
PANTHER
PTHR10641:SF518
149 276 128 9.50E-55 –
ProSiteProfiles
PS51294
173 228 56 24.614
IPR017930
SUPERFAMILY
SSF46689
175 271 97 1.08E-28
IPR009057
SMART
SM00717
177 226 50 8.50E-15
IPR001005
Gene3D
G3DSA:1.10.10.60
179 232 54 2.70E-22
IPR009057
CDD
cd00167
181 224 44 2.10E-13 –
Pfam
PF13921
181 235 55 3.50E-15 –
SMART
SM00717
229 277 49 7.60E-12
IPR001005
ProSiteProfiles
PS51294
229 280 52 11.352
IPR017930
CDD
cd00167
232 275 44 7.35E-10 –
Gene3D
G3DSA:1.10.10.60
233 276 44 5.80E-18
IPR009057

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj2g3v0949390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0949390.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.