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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0960420 |
| Transcript ID | Lj2g3v0960420.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | polygalacturonase PG1 precursor [Glycine max] gi|351724723|ref|NP_001238091.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 25 | 25 | – | – | |
| Phobius | 1 | 25 | 25 | – | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| SignalP | 1 | 21 | 21 | – | – | |
| SignalP | 1 | 25 | 25 | – | – | |
| PANTHER | 4 | 297 | 294 | 1.10E-193 | – | |
| PANTHER | 4 | 297 | 294 | 1.10E-193 | – | |
| Phobius | 6 | 17 | 12 | – | – | |
| Phobius | 18 | 25 | 8 | – | – | |
| Phobius | 26 | 297 | 272 | – | – | |
| Gene3D | 38 | 297 | 260 | 1.50E-93 | ||
| SUPERFAMILY | 40 | 297 | 258 | 3.89E-90 | ||
| Pfam | 75 | 297 | 223 | 2.00E-58 | ||
| SMART | 170 | 219 | 50 | 16 | ||
| SMART | 220 | 241 | 22 | 1800 | ||
| SMART | 243 | 263 | 21 | 9000 | ||
| ProSitePatterns | 250 | 263 | 14 | – | ||
| SMART | 273 | 294 | 22 | 0.96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj2g3v0960420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0960420.1, powered by CORGI.
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