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Lj2g3v1056970.1

Overview

Field Value
Gene ID Lj2g3v1056970
Transcript ID Lj2g3v1056970.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cullin-3A-like [Glycine max] gi|356572514|ref|XP_003554413.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11932
1 732 732 0 –
PANTHER
PTHR11932:SF86
1 732 732 0 –
SUPERFAMILY
SSF74788
22 372 351 1.91E-113
IPR016159
Gene3D
G3DSA:1.20.1310.10
26 147 122 3.70E-29 –
Pfam
PF00888
29 631 603 1.30E-214
IPR001373
Gene3D
G3DSA:1.20.1310.10
150 266 117 2.40E-37 –
Gene3D
G3DSA:1.20.1310.10
269 377 109 1.20E-35 –
SUPERFAMILY
SSF75632
368 641 274 3.53E-95
IPR016158
ProSiteProfiles
PS50069
374 602 229 54.585
IPR016158
Gene3D
G3DSA:1.20.1310.10
378 480 103 7.70E-42 –
SMART
SM00182
404 551 148 4.60E-63
IPR016158
Gene3D
G3DSA:4.10.1030.10
491 556 66 3.50E-26 –
Gene3D
G3DSA:1.10.10.10
562 630 69 9.20E-22
IPR011991
Gene3D
G3DSA:1.10.10.10
631 732 102 8.50E-37
IPR011991
SUPERFAMILY
SSF46785
645 732 88 9.98E-27
IPR011991
SMART
SM00884
660 727 68 8.60E-35
IPR019559
Pfam
PF10557
663 723 61 2.30E-26
IPR019559

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0031625
Molecular function Ubiquitin protein ligase binding Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj2g3v1056970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1056970.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.