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Lj2g3v1068690.1

Overview

Field Value
Gene ID Lj2g3v1068690
Transcript ID Lj2g3v1068690.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial-like [Cicer arietinum] gi|502091036|ref|XP_004489421.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24015:SF640
22 495 474 3.30E-304 –
PANTHER
PTHR24015
22 495 474 3.30E-304 –
Pfam
PF01535
156 180 25 0.012
IPR002885
Pfam
PF01535
217 243 27 4.50E-05
IPR002885
Pfam
PF01535
292 319 28 0.011
IPR002885
Pfam
PF01535
320 347 28 0.052
IPR002885
Pfam
PF01535
354 380 27 0.21
IPR002885
Gene3D
G3DSA:1.25.40.10
386 521 136 5.70E-06
IPR011990
Pfam
PF01535
392 415 24 0.035
IPR002885
SUPERFAMILY
SSF48452
392 477 86 1.07E-05
IPR011990
Pfam
PF14432
490 623 134 2.20E-30
IPR032867

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v1068690.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1068690.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.