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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1277820 |
| Transcript ID | Lj2g3v1277820.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Glycine max] gi|356498282|ref|XP_003517982.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | – | – | |
| PANTHER | 4 | 23 | 20 | 6.60E-301 | – | |
| PANTHER | 4 | 23 | 20 | 6.60E-301 | – | |
| PANTHER | 44 | 481 | 438 | 6.60E-301 | – | |
| PANTHER | 44 | 481 | 438 | 6.60E-301 | – | |
| ProSiteProfiles | 101 | 135 | 35 | 9.504 | ||
| Pfam | 104 | 132 | 29 | 0.038 | ||
| ProSiteProfiles | 136 | 170 | 35 | 7.662 | ||
| ProSiteProfiles | 171 | 201 | 31 | 5.503 | ||
| Gene3D | 198 | 336 | 139 | 1.60E-08 | ||
| Pfam | 201 | 248 | 48 | 1.50E-09 | ||
| ProSiteProfiles | 202 | 236 | 35 | 11.466 | ||
| TIGRFAM | 204 | 237 | 34 | 7.10E-07 | ||
| ProSiteProfiles | 237 | 271 | 35 | 5.689 | ||
| SUPERFAMILY | 266 | 439 | 174 | 4.80E-06 | ||
| ProSiteProfiles | 272 | 302 | 31 | 8.046 | ||
| TIGRFAM | 277 | 303 | 27 | 1.30E-04 | ||
| Pfam | 277 | 302 | 26 | 1.30E-04 | ||
| ProSiteProfiles | 303 | 337 | 35 | 11.126 | ||
| Pfam | 303 | 349 | 47 | 9.90E-10 | ||
| TIGRFAM | 306 | 339 | 34 | 3.10E-05 | ||
| ProSiteProfiles | 338 | 373 | 36 | 8.177 | ||
| TIGRFAM | 341 | 374 | 34 | 1.10E-04 | ||
| ProSiteProfiles | 374 | 408 | 35 | 7.848 | ||
| Pfam | 378 | 401 | 24 | 0.021 | ||
| Gene3D | 404 | 458 | 55 | 1.60E-08 | ||
| Pfam | 409 | 434 | 26 | 0.21 | ||
| ProSiteProfiles | 440 | 474 | 35 | 6.665 | ||
| Pfam | 476 | 601 | 126 | 4.00E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj2g3v1277820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1277820.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.