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Lj2g3v1277880.1

Overview

Field Value
Gene ID Lj2g3v1277880
Transcript ID Lj2g3v1277880.1
Lotus japonicus genome version MG20 v3.0
Description E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gi|357486961|ref|XP_003613768.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 183 183 – –
MobiDBLite
mobidb-lite
20 58 39 – –
PANTHER
PTHR23012
52 277 226 3.80E-162
IPR033275
PANTHER
PTHR23012:SF57
52 277 226 3.80E-162 –
ProSiteProfiles
PS51292
62 122 61 22.718
IPR011016
Gene3D
G3DSA:3.30.40.10
68 120 53 3.90E-19
IPR013083
SUPERFAMILY
SSF57850
68 120 53 1.01E-14 –
SMART
SM00744
69 116 48 5.30E-20
IPR011016
Pfam
PF12906
70 115 46 3.90E-13
IPR011016
Pfam
PF12428
121 240 120 1.40E-44
IPR022143
Coils
Coil
158 178 21 – –
TMHMM
TMhelix
184 206 23 – –
Phobius
TRANSMEMBRANE
184 203 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
204 217 14 – –
Phobius
TRANSMEMBRANE
218 240 23 – –
TMHMM
TMhelix
221 243 23 – –
Phobius
CYTOPLASMIC_DOMAIN
241 289 49 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v1277880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1277880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.