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Lj2g3v1352610.1

Overview

Field Value
Gene ID Lj2g3v1352610
Transcript ID Lj2g3v1352610.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TMV resistance protein N-like [Glycine max] gi|356497814|ref|XP_003517752.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 31 31 – –
PANTHER
PTHR11017:SF151
17 533 517 5.50E-274 –
PANTHER
PTHR11017
17 533 517 5.50E-274 –
SUPERFAMILY
SSF52200
31 177 147 1.10E-36
IPR000157
ProSiteProfiles
PS50104
37 174 138 29.808
IPR000157
Gene3D
G3DSA:3.40.50.10140
37 155 119 2.90E-21
IPR000157
Pfam
PF01582
38 206 169 9.90E-38
IPR000157
SMART
SM00255
38 174 137 4.00E-40
IPR000157
SUPERFAMILY
SSF52540
202 469 268 2.40E-61
IPR027417
Pfam
PF00931
215 489 275 4.50E-40
IPR002182
Gene3D
G3DSA:3.40.50.300
215 372 158 1.80E-12
IPR027417
PRINTS
PR00364
234 249 16 4.90E-19 –
CDD
cd00009
237 357 121 0.00100256 –
PRINTS
PR00364
316 330 15 4.90E-19 –
PRINTS
PR00364
409 423 15 4.90E-19 –
SUPERFAMILY
SSF46785
447 533 87 5.17E-10
IPR011991

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0007165
Biological process Signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
Subterm of
Part of
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj2g3v1352610.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1352610.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.