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Lj2g3v1364760.1

Overview

Field Value
Gene ID Lj2g3v1364760
Transcript ID Lj2g3v1364760.1
Lotus japonicus genome version MG20 v3.0
Description MYB transcription factor MYB138 [Glycine max] gi|351722587|ref|NP_001237761.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12374:SF26
5 190 186 5.80E-109 –
PANTHER
PTHR12374
5 190 186 5.80E-109 –
ProSiteProfiles
PS50158
7 22 16 8.631
IPR001878
MobiDBLite
mobidb-lite
59 92 34 – –
ProSiteProfiles
PS51294
87 143 57 17.81
IPR017930
SUPERFAMILY
SSF46689
89 142 54 1.12E-16
IPR009057
TIGRFAM
TIGR01557
90 141 52 2.60E-16
IPR006447
SMART
SM00717
91 141 51 1.30E-10
IPR001005
Gene3D
G3DSA:1.10.10.60
93 138 46 1.20E-10
IPR009057
Pfam
PF00249
94 138 45 8.10E-12
IPR001005
CDD
cd00167
94 139 46 1.08E-09 –
MobiDBLite
mobidb-lite
239 310 72 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v1364760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1364760.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.