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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1455300 |
| Transcript ID | Lj2g3v1455300.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502162652|ref|XP_004512570.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | – | – | |
| PANTHER | 32 | 112 | 81 | 4.40E-212 | – | |
| PANTHER | 32 | 112 | 81 | 4.40E-212 | – | |
| SUPERFAMILY | 54 | 116 | 63 | 2.78E-12 | ||
| SMART | 61 | 134 | 74 | 0.001 | ||
| Gene3D | 61 | 115 | 55 | 4.00E-12 | ||
| ProSiteProfiles | 62 | 129 | 68 | 11.531 | ||
| CDD | 64 | 116 | 53 | 5.45E-13 | – | |
| Pfam | 65 | 115 | 51 | 7.90E-09 | ||
| PANTHER | 132 | 280 | 149 | 4.40E-212 | – | |
| PANTHER | 132 | 280 | 149 | 4.40E-212 | – | |
| SUPERFAMILY | 157 | 235 | 79 | 6.43E-13 | ||
| SMART | 160 | 232 | 73 | 8.20E-07 | ||
| Gene3D | 160 | 233 | 74 | 4.50E-13 | ||
| ProSiteProfiles | 161 | 227 | 67 | 14.089 | ||
| CDD | 163 | 228 | 66 | 5.77E-13 | – | |
| Pfam | 165 | 225 | 61 | 1.50E-10 | ||
| PANTHER | 298 | 541 | 244 | 4.40E-212 | – | |
| PANTHER | 298 | 541 | 244 | 4.40E-212 | – | |
| Gene3D | 299 | 355 | 57 | 3.40E-11 | ||
| SUPERFAMILY | 301 | 383 | 83 | 7.75E-11 | ||
| SMART | 302 | 378 | 77 | 8.40E-07 | ||
| ProSiteProfiles | 303 | 370 | 68 | 11.154 | ||
| CDD | 305 | 374 | 70 | 4.85E-13 | – | |
| Pfam | 306 | 354 | 49 | 1.60E-08 | ||
| SUPERFAMILY | 391 | 471 | 81 | 3.80E-12 | ||
| SMART | 394 | 468 | 75 | 7.70E-06 | ||
| Gene3D | 394 | 469 | 76 | 1.80E-12 | ||
| ProSiteProfiles | 395 | 463 | 69 | 11.72 | ||
| Pfam | 397 | 464 | 68 | 3.50E-08 | ||
| MobiDBLite | 512 | 537 | 26 | – | – | |
| SMART | 548 | 618 | 71 | 1.80E-05 | ||
| ProSiteProfiles | 549 | 613 | 65 | 13.376 | ||
| Gene3D | 549 | 618 | 70 | 1.10E-12 | ||
| SUPERFAMILY | 549 | 619 | 71 | 1.75E-12 | ||
| Pfam | 551 | 614 | 64 | 1.20E-06 | ||
| CDD | 551 | 614 | 64 | 7.86E-09 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj2g3v1455300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1455300.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.