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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1455350 |
| Transcript ID | Lj2g3v1455350.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g65570-like [Glycine max] gi|356529693|ref|XP_003533423.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 546 | 523 | 0 | – | |
| PANTHER | 24 | 546 | 523 | 0 | – | |
| ProSiteProfiles | 34 | 64 | 31 | 7.278 | ||
| Pfam | 41 | 65 | 25 | 1.60E-04 | ||
| TIGRFAM | 41 | 66 | 26 | 9.60E-05 | ||
| SUPERFAMILY | 49 | 89 | 41 | 4.34E-06 | ||
| ProSiteProfiles | 65 | 99 | 35 | 11.071 | ||
| Pfam | 66 | 111 | 46 | 9.40E-13 | ||
| TIGRFAM | 67 | 101 | 35 | 3.30E-07 | ||
| Gene3D | 74 | 298 | 225 | 1.90E-06 | ||
| ProSiteProfiles | 100 | 134 | 35 | 6.259 | ||
| ProSiteProfiles | 136 | 166 | 31 | 7.125 | ||
| Pfam | 166 | 210 | 45 | 1.30E-09 | ||
| ProSiteProfiles | 167 | 201 | 35 | 12.036 | ||
| TIGRFAM | 170 | 203 | 34 | 1.00E-06 | ||
| ProSiteProfiles | 202 | 236 | 35 | 5.393 | ||
| ProSiteProfiles | 237 | 267 | 31 | 5.163 | ||
| ProSiteProfiles | 268 | 302 | 35 | 10.337 | ||
| Pfam | 269 | 315 | 47 | 2.30E-08 | ||
| TIGRFAM | 270 | 303 | 34 | 1.40E-06 | ||
| ProSiteProfiles | 303 | 337 | 35 | 5.579 | ||
| Gene3D | 335 | 399 | 65 | 1.90E-06 | ||
| ProSiteProfiles | 338 | 368 | 31 | 6.917 | ||
| Pfam | 344 | 366 | 23 | 0.0063 | ||
| SUPERFAMILY | 353 | 393 | 41 | 4.34E-06 | ||
| ProSiteProfiles | 369 | 403 | 35 | 11.06 | ||
| Pfam | 371 | 401 | 31 | 1.80E-06 | ||
| TIGRFAM | 371 | 404 | 34 | 7.30E-05 | ||
| ProSiteProfiles | 404 | 434 | 31 | 7.202 | ||
| ProSiteProfiles | 440 | 470 | 31 | 6.171 | ||
| Pfam | 443 | 466 | 24 | 0.084 | ||
| Gene3D | 469 | 522 | 54 | 8.30E-05 | ||
| ProSiteProfiles | 471 | 501 | 31 | 7.3 | ||
| Pfam | 473 | 498 | 26 | 0.44 | ||
| SUPERFAMILY | 478 | 527 | 50 | 4.34E-06 | ||
| ProSiteProfiles | 505 | 539 | 35 | 5.536 | ||
| Pfam | 543 | 666 | 124 | 1.30E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj2g3v1455350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1455350.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.