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Lj2g3v1509550.1

Overview

Field Value
Gene ID Lj2g3v1509550
Transcript ID Lj2g3v1509550.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein ROC3-like [Glycine max] gi|356529736|ref|XP_003533444.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24326
17 150 134 7.10E-286 –
PANTHER
PTHR24326:SF267
17 150 134 7.10E-286 –
MobiDBLite
mobidb-lite
30 81 52 – –
SUPERFAMILY
SSF46689
68 132 65 4.60E-19
IPR009057
Gene3D
G3DSA:1.10.10.60
70 136 67 2.20E-21
IPR009057
ProSiteProfiles
PS50071
71 131 61 16.876
IPR001356
SMART
SM00389
72 135 64 6.20E-19
IPR001356
Pfam
PF00046
74 129 56 5.40E-18
IPR001356
CDD
cd00086
74 132 59 7.95E-18 –
ProSitePatterns
PS00027
106 129 24 –
IPR017970
PANTHER
PTHR24326
180 193 14 7.10E-286 –
PANTHER
PTHR24326:SF267
180 193 14 7.10E-286 –
ProSiteProfiles
PS50848
265 503 239 42.907
IPR002913
SUPERFAMILY
SSF55961
267 502 236 2.06E-31 –
CDD
cd08875
269 499 231 6.99E-109 –
SMART
SM00234
274 500 227 7.00E-26
IPR002913
Pfam
PF01852
275 500 226 4.20E-37
IPR002913
PANTHER
PTHR24326:SF267
476 757 282 7.10E-286 –
PANTHER
PTHR24326
476 757 282 7.10E-286 –
SUPERFAMILY
SSF55961
518 753 236 8.52E-19 –
Coils
Coil
771 776 6 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj2g3v1509550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1509550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.