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Lj2g3v1549570.1

Overview

Field Value
Gene ID Lj2g3v1549570
Transcript ID Lj2g3v1549570.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description NB-LRR type disease resistance protein Rps1-k-2 [Medicago truncatula] gi|357457003|ref|XP_003598782.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23155:SF562
1 478 478 2.70E-212 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 594 594 – –
PANTHER
PTHR23155
1 478 478 2.70E-212 –
SUPERFAMILY
SSF52540
3 129 127 2.12E-27
IPR027417
Pfam
PF00931
3 153 151 1.40E-31
IPR002182
SUPERFAMILY
SSF52058
194 396 203 7.14E-36
IPR032675
Gene3D
G3DSA:3.80.10.10
270 399 130 5.90E-24
IPR032675
Coils
Coil
408 428 21 – –
SUPERFAMILY
SSF52058
426 588 163 7.14E-36
IPR032675
Gene3D
G3DSA:3.80.10.10
461 552 92 5.90E-24
IPR032675
PANTHER
PTHR23155:SF562
540 592 53 2.70E-212 –
PANTHER
PTHR23155
540 592 53 2.70E-212 –
Phobius
TRANSMEMBRANE
595 615 21 – –
Phobius
CYTOPLASMIC_DOMAIN
616 632 17 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj2g3v1549570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1549570.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.