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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1550110 |
| Transcript ID | Lj2g3v1550110.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Glycine max] gi|356536685|ref|XP_003536866.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 58 | 263 | 206 | 0 | – | |
| PANTHER | 58 | 263 | 206 | 0 | – | |
| SUPERFAMILY | 88 | 272 | 185 | 1.35E-05 | ||
| ProSiteProfiles | 109 | 143 | 35 | 9.602 | ||
| Gene3D | 112 | 165 | 54 | 2.00E-10 | ||
| Pfam | 113 | 155 | 43 | 1.50E-08 | ||
| TIGRFAM | 113 | 145 | 33 | 3.40E-05 | ||
| ProSiteProfiles | 179 | 209 | 31 | 8.901 | ||
| TIGRFAM | 182 | 209 | 28 | 0.0024 | ||
| Pfam | 182 | 209 | 28 | 0.0031 | ||
| Pfam | 210 | 246 | 37 | 4.10E-09 | ||
| ProSiteProfiles | 210 | 244 | 35 | 12.704 | ||
| TIGRFAM | 212 | 245 | 34 | 1.30E-08 | ||
| Gene3D | 213 | 276 | 64 | 2.00E-10 | ||
| ProSiteProfiles | 245 | 275 | 31 | 9.01 | ||
| TIGRFAM | 248 | 274 | 27 | 2.60E-04 | ||
| Pfam | 248 | 274 | 27 | 2.20E-04 | ||
| ProSiteProfiles | 279 | 313 | 35 | 5.086 | ||
| PANTHER | 298 | 625 | 328 | 0 | – | |
| PANTHER | 298 | 625 | 328 | 0 | – | |
| ProSiteProfiles | 314 | 344 | 31 | 7.245 | ||
| TIGRFAM | 319 | 346 | 28 | 4.30E-04 | ||
| Pfam | 319 | 346 | 28 | 3.10E-05 | ||
| ProSiteProfiles | 345 | 379 | 35 | 10.983 | ||
| TIGRFAM | 347 | 380 | 34 | 6.00E-06 | ||
| Pfam | 347 | 376 | 30 | 5.40E-05 | ||
| Gene3D | 414 | 443 | 30 | 2.00E-10 | ||
| ProSiteProfiles | 416 | 446 | 31 | 8.462 | ||
| Pfam | 420 | 446 | 27 | 2.00E-04 | ||
| TIGRFAM | 420 | 446 | 27 | 3.60E-04 | ||
| Pfam | 447 | 493 | 47 | 5.40E-09 | ||
| ProSiteProfiles | 447 | 481 | 35 | 11.816 | ||
| TIGRFAM | 449 | 482 | 34 | 2.30E-08 | ||
| ProSiteProfiles | 482 | 517 | 36 | 6.752 | ||
| ProSiteProfiles | 518 | 552 | 35 | 6.434 | ||
| Gene3D | 578 | 603 | 26 | 2.00E-10 | ||
| ProSiteProfiles | 584 | 618 | 35 | 5.996 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1550110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1550110.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.