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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1633190 |
| Transcript ID | Lj2g3v1633190.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g02330-like [Cicer arietinum] gi|502161726|ref|XP_004512264.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 42 | 311 | 270 | 0 | – | |
| PANTHER | 42 | 311 | 270 | 0 | – | |
| ProSiteProfiles | 44 | 74 | 31 | 6.204 | ||
| Pfam | 75 | 122 | 48 | 4.70E-15 | ||
| ProSiteProfiles | 75 | 109 | 35 | 10.896 | ||
| TIGRFAM | 77 | 111 | 35 | 2.20E-07 | ||
| ProSiteProfiles | 110 | 144 | 35 | 7.344 | ||
| ProSiteProfiles | 145 | 176 | 32 | 6.149 | ||
| Pfam | 177 | 224 | 48 | 1.70E-09 | ||
| ProSiteProfiles | 177 | 212 | 36 | 9.668 | ||
| ProSiteProfiles | 245 | 275 | 31 | 8.473 | ||
| Pfam | 250 | 275 | 26 | 0.0011 | ||
| ProSiteProfiles | 276 | 310 | 35 | 10.698 | ||
| TIGRFAM | 279 | 311 | 33 | 2.10E-06 | ||
| Pfam | 279 | 306 | 28 | 1.20E-04 | ||
| ProSiteProfiles | 311 | 345 | 35 | 6.928 | ||
| Gene3D | 344 | 394 | 51 | 6.90E-05 | ||
| ProSiteProfiles | 346 | 380 | 35 | 7.574 | ||
| ProSiteProfiles | 449 | 479 | 31 | 5.437 | ||
| PANTHER | 450 | 756 | 307 | 0 | – | |
| PANTHER | 450 | 756 | 307 | 0 | – | |
| Gene3D | 452 | 510 | 59 | 6.90E-05 | ||
| ProSiteProfiles | 480 | 514 | 35 | 9.788 | ||
| Pfam | 483 | 512 | 30 | 9.20E-05 | ||
| TIGRFAM | 483 | 513 | 31 | 7.90E-04 | ||
| Gene3D | 547 | 603 | 57 | 6.90E-05 | ||
| ProSiteProfiles | 550 | 580 | 31 | 6.862 | ||
| Pfam | 555 | 575 | 21 | 0.26 | ||
| SUPERFAMILY | 565 | 605 | 41 | 1.95E-07 | ||
| Pfam | 580 | 628 | 49 | 1.20E-12 | ||
| ProSiteProfiles | 581 | 615 | 35 | 11.948 | ||
| TIGRFAM | 583 | 616 | 34 | 1.10E-06 | ||
| ProSiteProfiles | 616 | 651 | 36 | 8.221 | ||
| ProSiteProfiles | 652 | 687 | 36 | 7.958 | ||
| Pfam | 655 | 677 | 23 | 0.0043 | ||
| TIGRFAM | 656 | 677 | 22 | 0.0018 | ||
| SUPERFAMILY | 667 | 741 | 75 | 1.95E-07 | ||
| Gene3D | 678 | 743 | 66 | 2.40E-09 | ||
| ProSiteProfiles | 715 | 749 | 35 | 9.021 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1633190.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1633190.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.