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PF05000

Source: Pfam

Description

RNA polymerase Rpb1, domain 4

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of

Associated Lotus transcripts 17

Transcript Name Description Predicted domains Domain count
Lj0g3v0053889.1
– RNA polymerase beta'' subunit [Lotus japonicus] gi|13518438|ref|NP_084798.1|
Domains
11
Lj2g3v1648030.1
– RNA polymerase II largest subunit [Rhododendron macrophyllum] gi|68300797|gb|AAY89341.1|
Domains
5
Lj2g3v1659630.1
– PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer arietinum] gi|502161489|ref|XP_004512182.1|
Domains
29
LotjaGi1g1v0634400.1
– DNA-directed RNA polymerase subunit; TAIR: AT5G60040.1 nuclear RNA polymerase C1; Swiss-Prot: sp|F4JXF9|NRPC1_ARATH DNA-directed RNA polymerase III subunit 1; TrEMBL-Plants: tr|I1LK95|I1LK95_SOYBN DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi1g1v0634400
Domains
29
LotjaGi1g1v0660200_LC.1
– DNA-directed RNA polymerase subunit beta''; TAIR: ATCG00170.1 DNA-directed RNA polymerase family protein (ChrC); Swiss-Prot: sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|A0A023IN53|A0A023IN53_LENCU RNA polymerase beta' subunit; Found in the gene: LotjaGi1g1v0660200_LC
Domains
9
LotjaGi1g1v0660200_LC.3
– DNA-directed RNA polymerase subunit beta''; TAIR: ATCG00170.1 DNA-directed RNA polymerase family protein (ChrC); Swiss-Prot: sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|A0A0K0LU53|A0A0K0LU53_9FABA DNA-directed RNA polymerase subunit beta''; Found in the gene: LotjaGi1g1v0660200_LC
Domains
9
LotjaGi1g1v0660200_LC.5
– DNA-directed RNA polymerase subunit beta''; TAIR: ATCG00170.1 DNA-directed RNA polymerase family protein (ChrC); Swiss-Prot: sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|A0A0K0LU53|A0A0K0LU53_9FABA DNA-directed RNA polymerase subunit beta''; Found in the gene: LotjaGi1g1v0660200_LC
Domains
7
LotjaGi2g1v0377500.1
– DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500
Domains
38
LotjaGi2g1v0377500.2
– DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500
Domains
38
LotjaGi2g1v0377500.3
– DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500
Domains
38
LotjaGi2g1v0377500.4
– DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500
Domains
38
LotjaGi2g1v0377500.5
– DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500
Domains
38
LotjaGi2g1v0430800.1
– DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800
Domains
19
LotjaGi2g1v0430800.2
– DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800
Domains
24
LotjaGi2g1v0430800.3
– DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800
Domains
24
LotjaGi2g1v0430800.4
– DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800
Domains
19
LotjaGi5g1v0147900.1
– DNA-directed RNA polymerase subunit; TAIR: AT3G57660.1 nuclear RNA polymerase A1; Swiss-Prot: sp|Q9SVY0|NRPA1_ARATH DNA-directed RNA polymerase I subunit 1; TrEMBL-Plants: tr|A0A151QTE2|A0A151QTE2_CAJCA DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi5g1v0147900
Domains
28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 5.88