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IPR006592 is a RNA polymerase, N-terminal.
<p>The task of transcribing nuclear genes is shared between three RNA polymerases in eukaryotes: RNA polymerase (pol) I synthesizes the large rRNA, pol II synthesizes mRNA and pol III synthesizes tRNA and 5S rRNA [[cite:PUB00028105]]. Pol I transcription is localised to discrete sites called nucleoli; these can be likened to ribosome factories, in which rRNA is synthesised by pol I in the fibrillar centres and then processed and assembled into ribosomes in the surrounding granular regions [[cite:PUB00028106]]. Prokaryotes, in contrast, posses a single RNA polymerase, with transcription being controlled by the particular signam factor interacting with the catalytic core.</p> <p>This entry describes an N-terminal conserved region which can be found in the largest subunits of prokaryoptic and eukaryotic RNA polymerases.</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | DNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. | ||
Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer arietinum] gi|502158103|ref|XP_004511031.1| | 15 | ||
– | PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer arietinum] gi|502158103|ref|XP_004511031.1| | 10 | ||
– | PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer arietinum] gi|502161489|ref|XP_004512182.1| | 15 | ||
– | PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer arietinum] gi|502161489|ref|XP_004512182.1| | 29 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT5G60040.1 nuclear RNA polymerase C1; Swiss-Prot: sp|F4JXF9|NRPC1_ARATH DNA-directed RNA polymerase III subunit 1; TrEMBL-Plants: tr|I1LK95|I1LK95_SOYBN DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi1g1v0634400 | 29 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 | 38 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 | 38 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 | 38 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 | 38 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 | 38 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 | 19 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 | 24 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 | 24 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 | 19 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT2G40030.1 nuclear RNA polymerase D1B; Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|K7M0Q7|K7M0Q7_SOYBN DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi3g1v0318900 | 19 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT2G40030.1 nuclear RNA polymerase D1B; Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|K7M0Q7|K7M0Q7_SOYBN DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi3g1v0318900 | 19 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT2G40030.1 nuclear RNA polymerase D1B; Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|G7LG09|G7LG09_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi3g1v0318900 | 14 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT2G40030.1 nuclear RNA polymerase D1B; Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|G7LG09|G7LG09_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi3g1v0318900 | 16 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT2G40030.1 nuclear RNA polymerase D1B; Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|K7M0Q7|K7M0Q7_SOYBN DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi3g1v0319100 | 19 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT3G57660.1 nuclear RNA polymerase A1; Swiss-Prot: sp|Q9SVY0|NRPA1_ARATH DNA-directed RNA polymerase I subunit 1; TrEMBL-Plants: tr|A0A151QTE2|A0A151QTE2_CAJCA DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi5g1v0147900 | 28 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 5.00 |