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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1670720 |
| Transcript ID | Lj2g3v1670720.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RING-H2 finger protein ATL4M [Medicago truncatula] gi|357483919|ref|XP_003612246.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | – | – | |
| PANTHER | 30 | 70 | 41 | 7.30E-22 | – | |
| PANTHER | 30 | 70 | 41 | 7.30E-22 | – | |
| Phobius | 31 | 59 | 29 | – | – | |
| TMHMM | 35 | 57 | 23 | – | – | |
| Phobius | 60 | 70 | 11 | – | – | |
| TMHMM | 70 | 92 | 23 | – | – | |
| Phobius | 71 | 91 | 21 | – | – | |
| Phobius | 92 | 102 | 11 | – | – | |
| TMHMM | 102 | 124 | 23 | – | – | |
| Phobius | 103 | 124 | 22 | – | – | |
| Phobius | 125 | 237 | 113 | – | – | |
| PANTHER | 135 | 236 | 102 | 7.30E-22 | – | |
| PANTHER | 135 | 236 | 102 | 7.30E-22 | – | |
| Gene3D | 190 | 237 | 48 | 6.40E-19 | ||
| SUPERFAMILY | 191 | 237 | 47 | 5.30E-20 | – | |
| Pfam | 191 | 234 | 44 | 1.30E-11 | ||
| SMART | 192 | 233 | 42 | 2.60E-06 | ||
| ProSiteProfiles | 192 | 234 | 43 | 11.958 | ||
| CDD | 192 | 237 | 46 | 9.30E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj2g3v1670720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1670720.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.