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Lj2g3v1670920.1

Overview

Field Value
Gene ID Lj2g3v1670920
Transcript ID Lj2g3v1670920.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: E3 ubiquitin-protein ligase ZNRF3-like [Cicer arietinum] gi|502161454|ref|XP_004512170.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 17 17 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 4 4 – –
SignalP
SignalP-noTM_EUK
1 17 17 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
5 13 9 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
14 17 4 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
18 113 96 – –
SUPERFAMILY
SSF57850
38 85 48 3.53E-18 –
ProSiteProfiles
PS50089
39 81 43 12.666
IPR001841
Pfam
PF13639
39 81 43 2.60E-11
IPR001841
SMART
SM00184
39 80 42 5.30E-07
IPR001841
PANTHER
PTHR14155
39 106 68 1.10E-18 –
PANTHER
PTHR14155:SF2
39 106 68 1.10E-18 –
CDD
cd00162
39 81 43 2.14E-10 –
Gene3D
G3DSA:3.30.40.10
39 83 45 1.70E-14
IPR013083

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj2g3v1670920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1670920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.