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Lj2g3v1734490.1

Overview

Field Value
Gene ID Lj2g3v1734490
Transcript ID Lj2g3v1734490.1
Lotus japonicus genome version MG20 v3.0
Description Replication factor C subunit [Medicago truncatula] gi|357483535|ref|XP_003612054.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11669
1 160 160 3.50E-103 –
PANTHER
PTHR11669:SF25
1 160 160 3.50E-103 –
Gene3D
G3DSA:1.10.8.60
2 54 53 4.30E-15 –
SUPERFAMILY
SSF48019
57 149 93 5.44E-17
IPR008921
Gene3D
G3DSA:1.20.272.10
58 150 93 6.60E-23 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006260
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj2g3v1734490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1734490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.