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IPR008921 is a DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal.
<p>The Escherichia coli DNA polymerase III gamma complex clamp loader assembles the ring-shaped beta sliding clamp onto DNA. The core polymerase is tethered to the template by beta, enabling progressive replication of the genome. The E. coli complex clamp loader contains five different subunits, clamp loading only requires 3 of these -the gamma, delta, delta' complex. Three gamma subunits, and one each of delta and delta', are arranged in a circle. Each subunit adopts the same chain topology, and folds into three domains. However, the relative orientation of these domains is different for each subunit. The carboxy-terminal domains provide the major subunit contacts of the pentamer, although other intersubunit contacts are present. The amino-terminal domains do not form a continuous circle. These domains are arranged in a highly asymmetric fashion, and appear to dangle under the carboxy-terminal pentamer 'umbrella' [[cite:PUB00010612]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: replication factor C subunit 3-like [Glycine max] gi|356511754|ref|XP_003524588.1| | 13 | ||
– | DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|358348981|ref|XP_003638519.1| | 15 | ||
– | PREDICTED: replication factor C subunit 5-like [Glycine max] gi|356515902|ref|XP_003526636.1| | 16 | ||
– | Replication factor C subunit [Medicago truncatula] gi|357483535|ref|XP_003612054.1| | 6 | ||
– | 27 | |||
– | PREDICTED: replication factor C subunit 1-like [Cicer arietinum] gi|502145937|ref|XP_004506246.1| | 10 | ||
– | PREDICTED: replication factor C subunit 1-like [Glycine max] gi|356544778|ref|XP_003540824.1| | 8 | ||
– | Trichome branching-like protein [Gossypium arboreum] gi|395399800|gb|AFN58239.1| | 19 | ||
– | PREDICTED: replication factor C subunit 2-like [Glycine max] gi|356514052|ref|XP_003525721.1| | 16 | ||
– | DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|357477253|ref|XP_003608912.1| | 14 | ||
– | DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|357447087|ref|XP_003593819.1| | 14 | ||
– | Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|A0A0L9UUH5|A0A0L9UUH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004000 | 27 | ||
– | Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|G7KFD2|G7KFD2_MEDTR AAA family ATPase; Found in the gene: LotjaGi1g1v0004000 | 26 | ||
– | DNA polymerase III subunit; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A151RVR2|A0A151RVR2_CAJCA DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi1g1v0230800 | 15 | ||
– | Replication factor C subunit; TAIR: AT1G77470.1 replication factor C subunit 3; Swiss-Prot: sp|Q6YZ54|RFC3_ORYSJ Replication factor C subunit 3; TrEMBL-Plants: tr|A0A0B2QNG7|A0A0B2QNG7_GLYSO Replication factor C subunit 5; Found in the gene: LotjaGi1g1v0261200 | 17 | ||
– | Replication factor C subunit; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q9FXM3|RFC2_ORYSJ Replication factor C subunit 2; TrEMBL-Plants: tr|I3SKP0|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700 | 17 | ||
– | Replication factor C subunit; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q9FXM3|RFC2_ORYSJ Replication factor C subunit 2; TrEMBL-Plants: tr|I3SKP0|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700 | 17 | ||
– | Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100 | 14 | ||
– | Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100 | 14 | ||
– | Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100 | 14 | ||
– | DNA polymerase III subunit; TAIR: AT2G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|O64728|STI_ARATH Protein STICHEL; TrEMBL-Plants: tr|I1KNQ8|I1KNQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002600 | 19 | ||
– | Replication factor C subunit; TAIR: AT1G63160.1 replication factor C 2; Swiss-Prot: sp|Q9CAM7|RFC2_ARATH Replication factor C subunit 2; TrEMBL-Plants: tr|V7CBL1|V7CBL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0221000 | 17 | ||
– | Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A0B2RQ22|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500 | 14 | ||
– | Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A0B2RQ22|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500 | 14 | ||
– | DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP0|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr|I1M1Q6|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100 | 17 | ||
– | DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP0|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr|I1M1Q6|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100 | 17 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 3.85 |