Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR11669
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.019s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0102289.1
n.a. PREDICTED: replication factor C subunit 3-like [Glycine max] gi|356511754|ref|XP_003524588.1| chr0 43507085 43512829 +
1 domain prediction
 –
Lj1g3v0295860.1
n.a. DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|358348981|ref|XP_003638519.1| chr1 3476038 3481445 -
1 domain prediction
 –
Lj1g3v0827060.1
n.a. PREDICTED: replication factor C subunit 5-like [Glycine max] gi|356515902|ref|XP_003526636.1| chr1 10749307 10755129 -
1 domain prediction
 –
Lj1g3v0874130.1
n.a. PREDICTED: replication factor C subunit 4-like [Cicer arietinum] gi|502135976|ref|XP_004502518.1| chr1 11101036 11102854 -
1 domain prediction
 –
Lj2g3v1734490.1
n.a. Replication factor C subunit [Medicago truncatula] gi|357483535|ref|XP_003612054.1| chr2 26759406 26761485 -
1 domain prediction
 –
Lj4g3v0037530.1
n.a. trichome branching-like protein [Gossypium arboreum] gi|395399800|gb|AFN58239.1| chr4 340964 350907 -
1 domain prediction
 –
Lj4g3v0047610.1
n.a. trichome branching-like protein [Gossypium arboreum] gi|395399800|gb|AFN58239.1| chr4 382351 383840 -
1 domain prediction
 –
Lj4g3v0047620.1
n.a. trichome branching-like protein [Gossypium arboreum] gi|395399800|gb|AFN58239.1| chr4 384932 387073 -
1 domain prediction
 –
Lj4g3v1376890.1
n.a. PREDICTED: replication factor C subunit 2-like [Glycine max] gi|356514052|ref|XP_003525721.1| chr4 21170706 21174578 -
1 domain prediction
 –
Lj4g3v1389300.1
n.a. DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|357477253|ref|XP_003608912.1| chr4 21682057 21687852 -
1 domain prediction
 –
Lj4g3v1389300.3
n.a. DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|357477253|ref|XP_003608912.1| chr4 21682057 21684307 -
1 domain prediction
 –
Lj6g3v1971250.1
n.a. DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|357447087|ref|XP_003593819.1| chr6 22870330 22877570 -
1 domain prediction
 –
LotjaGi1g1v0230800.1
n.a. DNA polymerase III subunit; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A151RVR2|A0A151RVR2_CAJCA DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi1g1v0230800 LjG1.1_chr1 54117667 54122999 +
1 domain prediction
 –
LotjaGi1g1v0261200.1
n.a. Replication factor C subunit; TAIR: AT1G77470.1 replication factor C subunit 3; Swiss-Prot: sp|Q6YZ54|RFC3_ORYSJ Replication factor C subunit 3; TrEMBL-Plants: tr|A0A0B2QNG7|A0A0B2QNG7_GLYSO Replication factor C subunit 5; Found in the gene: LotjaGi1g1v0261200 LjG1.1_chr1 63940846 63947349 -
1 domain prediction
 –
LotjaGi1g1v0264700.1
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q93ZX1|RFC4_ARATH Replication factor C subunit 4; TrEMBL-Plants: tr|I3SKP0|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700 LjG1.1_chr1 64737031 64747848 -
1 domain prediction
 –
LotjaGi1g1v0264700.2
n.a. Replication factor C subunit; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q9FXM3|RFC2_ORYSJ Replication factor C subunit 2; TrEMBL-Plants: tr|I3SKP0|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700 LjG1.1_chr1 64737127 64747949 -
1 domain prediction
 –
LotjaGi1g1v0264700.3
n.a. Replication factor C subunit; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q9FXM3|RFC2_ORYSJ Replication factor C subunit 2; TrEMBL-Plants: tr|I3SKP0|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700 LjG1.1_chr1 64737533 64747684 -
1 domain prediction
 –
LotjaGi2g1v0111100.1
n.a. Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100 LjG1.1_chr2 39845933 39851896 +
1 domain prediction
 –
LotjaGi2g1v0111100.2
n.a. Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100 LjG1.1_chr2 39846096 39851061 +
1 domain prediction
 –
LotjaGi2g1v0111100.3
n.a. Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100 LjG1.1_chr2 39846096 39851625 +
1 domain prediction
 –
LotjaGi4g1v0002600.1
n.a. DNA polymerase III subunit; TAIR: AT2G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|O64728|STI_ARATH Protein STICHEL; TrEMBL-Plants: tr|I1KNQ8|I1KNQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002600 LjG1.1_chr4 576670 587323 -
1 domain prediction
 –
LotjaGi4g1v0221000.1
n.a. Replication factor C subunit; TAIR: AT1G63160.1 replication factor C 2; Swiss-Prot: sp|Q9CAM7|RFC2_ARATH Replication factor C subunit 2; TrEMBL-Plants: tr|V7CBL1|V7CBL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0221000 LjG1.1_chr4 52075365 52079759 +
1 domain prediction
 –
LotjaGi4g1v0225500.1
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A0B2RQ22|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500 LjG1.1_chr4 53104289 53109938 -
1 domain prediction
 –
LotjaGi4g1v0225500.2
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A0B2RQ22|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500 LjG1.1_chr4 53104334 53109688 -
1 domain prediction
 –
LotjaGi6g1v0319100.1
n.a. DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP0|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr|I1M1Q6|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100 LjG1.1_chr6 63605018 63612430 -
1 domain prediction
 –
LotjaGi6g1v0319100.2
n.a. DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP0|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr|I1M1Q6|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100 LjG1.1_chr6 63605214 63612397 -
1 domain prediction
 –