Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

SSF48019

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006260
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Subterm of

Associated Lotus transcripts 26

Transcript Name Description Predicted domains Domain count
Lj0g3v0102289.1
– PREDICTED: replication factor C subunit 3-like [Glycine max] gi|356511754|ref|XP_003524588.1|
Domains
13
Lj1g3v0295860.1
– DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|358348981|ref|XP_003638519.1|
Domains
15
Lj1g3v0827060.1
– PREDICTED: replication factor C subunit 5-like [Glycine max] gi|356515902|ref|XP_003526636.1|
Domains
16
Lj2g3v1734490.1
– Replication factor C subunit [Medicago truncatula] gi|357483535|ref|XP_003612054.1|
Domains
6
Lj2g3v3339780.1
–
Domains
27
Lj3g3v2926310.1
– PREDICTED: replication factor C subunit 1-like [Cicer arietinum] gi|502145937|ref|XP_004506246.1|
Domains
10
Lj3g3v2926310.2
– PREDICTED: replication factor C subunit 1-like [Glycine max] gi|356544778|ref|XP_003540824.1|
Domains
8
Lj4g3v0037530.1
– Trichome branching-like protein [Gossypium arboreum] gi|395399800|gb|AFN58239.1|
Domains
19
Lj4g3v1376890.1
– PREDICTED: replication factor C subunit 2-like [Glycine max] gi|356514052|ref|XP_003525721.1|
Domains
16
Lj4g3v1389300.1
– DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|357477253|ref|XP_003608912.1|
Domains
14
Lj6g3v1971250.1
– DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|357447087|ref|XP_003593819.1|
Domains
14
LotjaGi1g1v0004000.1
– Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|A0A0L9UUH5|A0A0L9UUH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004000
Domains
27
LotjaGi1g1v0004000.2
– Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|G7KFD2|G7KFD2_MEDTR AAA family ATPase; Found in the gene: LotjaGi1g1v0004000
Domains
26
LotjaGi1g1v0230800.1
– DNA polymerase III subunit; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A151RVR2|A0A151RVR2_CAJCA DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi1g1v0230800
Domains
15
LotjaGi1g1v0261200.1
– Replication factor C subunit; TAIR: AT1G77470.1 replication factor C subunit 3; Swiss-Prot: sp|Q6YZ54|RFC3_ORYSJ Replication factor C subunit 3; TrEMBL-Plants: tr|A0A0B2QNG7|A0A0B2QNG7_GLYSO Replication factor C subunit 5; Found in the gene: LotjaGi1g1v0261200
Domains
17
LotjaGi1g1v0264700.2
– Replication factor C subunit; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q9FXM3|RFC2_ORYSJ Replication factor C subunit 2; TrEMBL-Plants: tr|I3SKP0|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700
Domains
17
LotjaGi1g1v0264700.3
– Replication factor C subunit; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q9FXM3|RFC2_ORYSJ Replication factor C subunit 2; TrEMBL-Plants: tr|I3SKP0|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700
Domains
17
LotjaGi2g1v0111100.1
– Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100
Domains
14
LotjaGi2g1v0111100.2
– Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100
Domains
14
LotjaGi2g1v0111100.3
– Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100
Domains
14
LotjaGi4g1v0002600.1
– DNA polymerase III subunit; TAIR: AT2G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|O64728|STI_ARATH Protein STICHEL; TrEMBL-Plants: tr|I1KNQ8|I1KNQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002600
Domains
19
LotjaGi4g1v0221000.1
– Replication factor C subunit; TAIR: AT1G63160.1 replication factor C 2; Swiss-Prot: sp|Q9CAM7|RFC2_ARATH Replication factor C subunit 2; TrEMBL-Plants: tr|V7CBL1|V7CBL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0221000
Domains
17
LotjaGi4g1v0225500.1
– Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A0B2RQ22|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500
Domains
14
LotjaGi4g1v0225500.2
– Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A0B2RQ22|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500
Domains
14
LotjaGi6g1v0319100.1
– DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP0|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr|I1M1Q6|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100
Domains
17
LotjaGi6g1v0319100.2
– DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP0|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr|I1M1Q6|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100
Domains
17

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 3.85