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Lj2g3v1758490.1

Overview

Field Value
Gene ID Lj2g3v1758490
Transcript ID Lj2g3v1758490.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription initiation factor IIB 7-like isoform X2 [Cicer arietinum] gi|502161095|ref|XP_004512023.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11618:SF26
3 56 54 2.20E-251 –
Gene3D
G3DSA:2.20.25.10
3 42 40 7.80E-04 –
PANTHER
PTHR11618
3 56 54 2.20E-251
IPR000812
PRINTS
PR00685
23 43 21 7.30E-26
IPR000812
PANTHER
PTHR11618:SF26
73 345 273 2.20E-251 –
PANTHER
PTHR11618
73 345 273 2.20E-251
IPR000812
SUPERFAMILY
SSF47954
136 226 91 1.12E-15
IPR013763
Gene3D
G3DSA:1.10.472.10
137 230 94 4.20E-20
IPR013763
CDD
cd00043
137 218 82 5.49E-06 –
SMART
SM00385
139 220 82 2.90E-04
IPR013763
Pfam
PF00382
143 211 69 2.10E-07
IPR013150
PRINTS
PR00685
181 200 20 7.30E-26
IPR000812
PRINTS
PR00685
207 222 16 7.30E-26
IPR000812
SUPERFAMILY
SSF47954
233 331 99 6.13E-29
IPR013763
SMART
SM00385
235 316 82 1.70E-15
IPR013763
PRINTS
PR00685
236 254 19 7.30E-26
IPR000812
Pfam
PF00382
237 307 71 1.90E-12
IPR013150
Gene3D
G3DSA:1.10.472.10
237 332 96 8.70E-28
IPR013763
CDD
cd00043
237 315 79 2.49E-14 –
PRINTS
PR00685
270 286 17 7.30E-26
IPR000812
PRINTS
PR00685
302 316 15 7.30E-26
IPR000812

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0017025
Molecular function TBP-class protein binding Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).
Subterm of
GO:0070897
Biological process Transcription preinitiation complex assembly The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription.
Subterm of
Part of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj2g3v1758490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1758490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.