Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1768680.1

Overview

Field Value
Gene ID Lj2g3v1768680
Transcript ID Lj2g3v1768680.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription initiation factor IIB 7-like isoform X2 [Cicer arietinum] gi|502161095|ref|XP_004512023.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11618
1 20 20 1.90E-141
IPR000812
PANTHER
PTHR11618:SF26
1 20 20 1.90E-141 –
PANTHER
PTHR11618:SF26
37 215 179 1.90E-141 –
PANTHER
PTHR11618
37 215 179 1.90E-141
IPR000812
SUPERFAMILY
SSF47954
100 190 91 4.71E-16
IPR013763
CDD
cd00043
101 182 82 1.83E-06 –
Gene3D
G3DSA:1.10.472.10
101 205 105 3.30E-21
IPR013763
SMART
SM00385
103 184 82 2.90E-04
IPR013763
Pfam
PF00382
107 175 69 9.00E-08
IPR013150
PRINTS
PR00685
145 164 20 5.20E-09
IPR000812
PRINTS
PR00685
171 186 16 5.20E-09
IPR000812
PRINTS
PR00685
200 218 19 5.20E-09
IPR000812

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0017025
Molecular function TBP-class protein binding Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).
Subterm of
GO:0070897
Biological process Transcription preinitiation complex assembly The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription.
Subterm of
Part of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj2g3v1768680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1768680.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.