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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1828660 |
| Transcript ID | Lj2g3v1828660.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Glycine max] gi|356495448|ref|XP_003516589.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 28 | 28 | – | – | |
| PANTHER | 61 | 615 | 555 | 0 | – | |
| PANTHER | 61 | 615 | 555 | 0 | – | |
| Pfam | 102 | 149 | 48 | 3.40E-07 | ||
| ProSiteProfiles | 103 | 137 | 35 | 10.545 | ||
| TIGRFAM | 106 | 138 | 33 | 1.50E-05 | ||
| ProSiteProfiles | 173 | 203 | 31 | 5.261 | ||
| ProSiteProfiles | 204 | 238 | 35 | 10.896 | ||
| Pfam | 206 | 236 | 31 | 3.00E-08 | ||
| TIGRFAM | 206 | 235 | 30 | 3.80E-05 | ||
| ProSiteProfiles | 239 | 273 | 35 | 5.47 | ||
| ProSiteProfiles | 274 | 304 | 31 | 9.175 | ||
| TIGRFAM | 279 | 307 | 29 | 1.50E-04 | ||
| Gene3D | 280 | 375 | 96 | 1.80E-08 | ||
| Pfam | 303 | 332 | 30 | 5.70E-07 | ||
| ProSiteProfiles | 305 | 335 | 31 | 10.326 | ||
| TIGRFAM | 307 | 333 | 27 | 9.50E-07 | ||
| Pfam | 335 | 382 | 48 | 4.20E-10 | ||
| ProSiteProfiles | 336 | 370 | 35 | 11.86 | ||
| TIGRFAM | 338 | 371 | 34 | 6.00E-08 | ||
| ProSiteProfiles | 371 | 405 | 35 | 6.051 | ||
| ProSiteProfiles | 406 | 436 | 31 | 7.98 | ||
| Pfam | 436 | 484 | 49 | 9.10E-12 | ||
| ProSiteProfiles | 437 | 471 | 35 | 11.751 | ||
| TIGRFAM | 439 | 473 | 35 | 4.40E-07 | ||
| Gene3D | 441 | 468 | 28 | 1.80E-08 | ||
| ProSiteProfiles | 472 | 507 | 36 | 7.333 | ||
| TIGRFAM | 474 | 509 | 36 | 1.10E-04 | ||
| ProSiteProfiles | 508 | 538 | 31 | 6.884 | ||
| Gene3D | 538 | 593 | 56 | 1.80E-08 | ||
| ProSiteProfiles | 540 | 570 | 31 | 6.851 | ||
| ProSiteProfiles | 574 | 608 | 35 | 7.783 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1828660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1828660.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.