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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1828670 |
| Transcript ID | Lj2g3v1828670.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Glycine max] gi|356495448|ref|XP_003516589.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 16 | 16 | 5 | – | |
| PANTHER | 5 | 285 | 281 | 4.80E-197 | – | |
| PANTHER | 5 | 285 | 281 | 4.80E-197 | – | |
| Pfam | 5 | 52 | 48 | 1.60E-10 | ||
| Gene3D | 6 | 138 | 133 | 1.80E-07 | ||
| ProSiteProfiles | 6 | 40 | 35 | 11.86 | ||
| TIGRFAM | 8 | 41 | 34 | 2.40E-08 | ||
| ProSiteProfiles | 41 | 75 | 35 | 6.051 | ||
| ProSiteProfiles | 76 | 106 | 31 | 7.98 | ||
| Pfam | 106 | 154 | 49 | 3.50E-12 | ||
| ProSiteProfiles | 107 | 141 | 35 | 11.751 | ||
| TIGRFAM | 109 | 143 | 35 | 1.80E-07 | ||
| ProSiteProfiles | 142 | 177 | 36 | 7.333 | ||
| TIGRFAM | 144 | 179 | 36 | 4.30E-05 | ||
| ProSiteProfiles | 178 | 208 | 31 | 6.884 | ||
| Pfam | 182 | 205 | 24 | 1.3 | ||
| Gene3D | 208 | 263 | 56 | 1.80E-07 | ||
| ProSiteProfiles | 210 | 240 | 31 | 6.851 | ||
| ProSiteProfiles | 244 | 278 | 35 | 7.783 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1828670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1828670.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.