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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1828900 |
| Transcript ID | Lj2g3v1828900.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g50420-like [Glycine max] gi|356540705|ref|XP_003538826.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 315 | 290 | 0 | – | |
| PANTHER | 26 | 315 | 290 | 0 | – | |
| ProSiteProfiles | 45 | 75 | 31 | 9.065 | ||
| Pfam | 48 | 75 | 28 | 0.0014 | ||
| Gene3D | 48 | 62 | 15 | 2.80E-04 | ||
| ProSiteProfiles | 76 | 111 | 36 | 10.15 | ||
| Pfam | 77 | 122 | 46 | 7.90E-09 | ||
| ProSiteProfiles | 147 | 177 | 31 | 6.971 | ||
| Gene3D | 150 | 208 | 59 | 2.80E-04 | ||
| Pfam | 152 | 177 | 26 | 0.74 | ||
| ProSiteProfiles | 178 | 212 | 35 | 11.4 | ||
| Pfam | 178 | 225 | 48 | 1.10E-11 | ||
| TIGRFAM | 180 | 213 | 34 | 5.40E-05 | ||
| ProSiteProfiles | 213 | 247 | 35 | 7.991 | ||
| Pfam | 243 | 289 | 47 | 1.10E-04 | ||
| Gene3D | 246 | 321 | 76 | 2.80E-04 | ||
| ProSiteProfiles | 248 | 282 | 35 | 9.306 | ||
| TIGRFAM | 252 | 276 | 25 | 9.10E-04 | ||
| ProSiteProfiles | 283 | 313 | 31 | 5.514 | ||
| PANTHER | 351 | 660 | 310 | 0 | – | |
| PANTHER | 351 | 660 | 310 | 0 | – | |
| Gene3D | 379 | 408 | 30 | 2.80E-04 | ||
| ProSiteProfiles | 381 | 415 | 35 | 7.881 | ||
| Pfam | 383 | 408 | 26 | 0.49 | ||
| ProSiteProfiles | 451 | 481 | 31 | 6.095 | ||
| Pfam | 457 | 477 | 21 | 0.79 | ||
| Gene3D | 461 | 512 | 52 | 3.00E-05 | ||
| Pfam | 481 | 529 | 49 | 1.70E-10 | ||
| ProSiteProfiles | 482 | 516 | 35 | 12.386 | ||
| TIGRFAM | 485 | 517 | 33 | 3.10E-08 | ||
| ProSiteProfiles | 517 | 551 | 35 | 9.164 | ||
| Gene3D | 582 | 639 | 58 | 3.00E-05 | ||
| ProSiteProfiles | 619 | 653 | 35 | 6.401 | ||
| Coils | 679 | 699 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1828900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1828900.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.