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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1931920 |
| Transcript ID | Lj2g3v1931920.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: tetratricopeptide repeat protein 13-like [Cicer arietinum] gi|502160736|ref|XP_004511873.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 953 | 953 | – | – | |
| PANTHER | 6 | 101 | 96 | 0 | – | |
| PANTHER | 6 | 101 | 96 | 0 | – | |
| Gene3D | 19 | 111 | 93 | 2.40E-11 | ||
| SUPERFAMILY | 37 | 104 | 68 | 1.37E-44 | ||
| ProSiteProfiles | 37 | 104 | 68 | 8.082 | ||
| SMART | 37 | 70 | 34 | 4.5 | ||
| SMART | 71 | 104 | 34 | 44 | ||
| MobiDBLite | 134 | 166 | 33 | – | – | |
| MobiDBLite | 178 | 200 | 23 | – | – | |
| MobiDBLite | 216 | 236 | 21 | – | – | |
| ProSiteProfiles | 280 | 551 | 272 | 52.412 | ||
| ProSiteProfiles | 280 | 313 | 34 | 7.759 | ||
| Gene3D | 280 | 385 | 106 | 6.50E-26 | ||
| SMART | 280 | 313 | 34 | 11 | ||
| SUPERFAMILY | 284 | 550 | 267 | 1.37E-44 | ||
| Pfam | 285 | 346 | 62 | 9.20E-05 | – | |
| PANTHER | 311 | 689 | 379 | 0 | – | |
| PANTHER | 311 | 689 | 379 | 0 | – | |
| SMART | 314 | 347 | 34 | 0.0032 | ||
| ProSiteProfiles | 314 | 347 | 34 | 9.912 | ||
| ProSiteProfiles | 348 | 381 | 34 | 9.676 | ||
| SMART | 348 | 381 | 34 | 6.40E-05 | ||
| ProSiteProfiles | 382 | 415 | 34 | 6.992 | ||
| SMART | 382 | 415 | 34 | 12 | ||
| Gene3D | 386 | 479 | 94 | 1.30E-21 | ||
| SMART | 416 | 449 | 34 | 0.67 | ||
| ProSiteProfiles | 416 | 449 | 34 | 8.142 | ||
| ProSiteProfiles | 450 | 483 | 34 | 6.549 | ||
| SMART | 450 | 483 | 34 | 55 | ||
| Gene3D | 480 | 564 | 85 | 5.70E-18 | ||
| ProSiteProfiles | 484 | 517 | 34 | 7.906 | ||
| SMART | 484 | 517 | 34 | 0.008 | ||
| SMART | 518 | 551 | 34 | 5.40E-04 | ||
| ProSiteProfiles | 518 | 551 | 34 | 8.85 | ||
| Pfam | 519 | 548 | 30 | 0.0028 | ||
| MobiDBLite | 688 | 726 | 39 | – | – | |
| PANTHER | 740 | 860 | 121 | 0 | – | |
| PANTHER | 740 | 860 | 121 | 0 | – | |
| TMHMM | 952 | 974 | 23 | – | – | |
| Phobius | 954 | 974 | 21 | – | – | |
| Phobius | 975 | 984 | 10 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1931920.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1931920.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.