Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1988820.1

Overview

Field Value
Gene ID Lj2g3v1988820
Transcript ID Lj2g3v1988820.1
Lotus japonicus genome version MG20 v3.0
Description DNA repair protein rhp54 [Aegilops tauschii] gi|475601294|gb|EMT24776.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 63 63 – –
MobiDBLite
mobidb-lite
104 275 172 – –
PANTHER
PTHR10799
268 345 78 1.10E-198 –
PANTHER
PTHR10799:SF748
268 345 78 1.10E-198 –
PANTHER
PTHR10799
371 642 272 1.10E-198 –
PANTHER
PTHR10799:SF748
371 642 272 1.10E-198 –
SUPERFAMILY
SSF52540
389 530 142 2.00E-29
IPR027417
SMART
SM00487
396 633 238 1.20E-11
IPR014001
Gene3D
G3DSA:3.40.50.300
399 614 216 6.00E-08
IPR027417
ProSiteProfiles
PS51192
427 620 194 10.308
IPR014001
Pfam
PF00176
433 733 301 1.00E-20
IPR000330
SUPERFAMILY
SSF52540
557 622 66 2.00E-29
IPR027417
SUPERFAMILY
SSF52540
566 623 58 7.66E-43
IPR027417
PANTHER
PTHR10799
660 939 280 1.10E-198 –
PANTHER
PTHR10799:SF748
660 939 280 1.10E-198 –
SUPERFAMILY
SSF52540
749 912 164 7.66E-43
IPR027417
CDD
cd00079
751 885 135 1.07E-21 –
Gene3D
G3DSA:3.40.50.300
754 889 136 6.90E-16
IPR027417
Pfam
PF00271
761 877 117 3.60E-15
IPR001650
ProSiteProfiles
PS51194
762 925 164 12.979
IPR001650
SMART
SM00490
792 877 86 2.70E-13
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj2g3v1988820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1988820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.