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Lj2g3v1989250.1

Overview

Field Value
Gene ID Lj2g3v1989250
Transcript ID Lj2g3v1989250.1
Lotus japonicus genome version MG20 v3.0
Description Homeobox-leucine zipper protein HOX17 [Medicago truncatula] gi|357482123|ref|XP_003611347.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF04618
4 111 108 6.70E-27
IPR006712
PANTHER
PTHR24326:SF140
74 97 24 6.60E-117 –
PANTHER
PTHR24326
74 97 24 6.60E-117 –
MobiDBLite
mobidb-lite
87 142 56 – –
PANTHER
PTHR24326
113 301 189 6.60E-117 –
PANTHER
PTHR24326:SF140
113 301 189 6.60E-117 –
Gene3D
G3DSA:1.10.10.60
125 194 70 1.40E-18
IPR009057
SUPERFAMILY
SSF46689
131 197 67 2.52E-18
IPR009057
ProSiteProfiles
PS50071
136 196 61 17.427
IPR001356
SMART
SM00389
138 200 63 2.00E-15
IPR001356
CDD
cd00086
140 197 58 4.06E-15 –
Pfam
PF00046
140 194 55 2.60E-16
IPR001356
PRINTS
PR00031
167 176 10 1.90E-05
IPR000047
ProSitePatterns
PS00027
171 194 24 –
IPR017970
PRINTS
PR00031
176 192 17 1.90E-05
IPR000047
CDD
cd14686
189 228 40 0.00605174 –
Coils
Coil
195 232 38 – –
SMART
SM00340
196 239 44 4.20E-27
IPR003106
Pfam
PF02183
196 230 35 2.30E-11
IPR003106

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v1989250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1989250.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.