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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2002030 |
| Transcript ID | Lj2g3v2002030.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: vesicle-associated protein 1-2-like [Glycine max] gi|356495613|ref|XP_003516669.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 240 | 240 | 3.50E-69 | ||
| PANTHER | 1 | 240 | 240 | 3.30E-168 | – | |
| PANTHER | 1 | 240 | 240 | 3.30E-168 | ||
| Phobius | 1 | 218 | 218 | – | – | |
| SUPERFAMILY | 2 | 141 | 140 | 2.88E-45 | ||
| Gene3D | 4 | 124 | 121 | 8.20E-41 | ||
| ProSiteProfiles | 6 | 126 | 121 | 30.515 | ||
| Pfam | 7 | 111 | 105 | 1.80E-32 | ||
| MobiDBLite | 126 | 160 | 35 | – | – | |
| Coils | 170 | 211 | 42 | – | – | |
| TMHMM | 218 | 237 | 20 | – | – | |
| Phobius | 219 | 238 | 20 | – | – | |
| Phobius | 239 | 241 | 3 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
Expression pattern of Lj2g3v2002030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2002030.1, powered by CORGI.
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