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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2017390 |
| Transcript ID | Lj2g3v2017390.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Cicer arietinum] gi|502159991|ref|XP_004511598.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 85 | 85 | – | – | |
| PANTHER | 11 | 294 | 284 | 2.90E-230 | – | |
| PANTHER | 11 | 294 | 284 | 2.90E-230 | – | |
| TMHMM | 85 | 107 | 23 | – | – | |
| Phobius | 86 | 107 | 22 | – | – | |
| Phobius | 108 | 118 | 11 | – | – | |
| TMHMM | 117 | 139 | 23 | – | – | |
| Phobius | 119 | 139 | 21 | – | – | |
| Phobius | 140 | 193 | 54 | – | – | |
| TMHMM | 193 | 212 | 20 | – | – | |
| Phobius | 194 | 212 | 19 | – | – | |
| Phobius | 213 | 223 | 11 | – | – | |
| TMHMM | 222 | 244 | 23 | – | – | |
| Phobius | 224 | 243 | 20 | – | – | |
| Phobius | 244 | 247 | 4 | – | – | |
| TMHMM | 246 | 268 | 23 | – | – | |
| Phobius | 248 | 268 | 21 | – | – | |
| Phobius | 269 | 382 | 114 | – | – | |
| SUPERFAMILY | 317 | 374 | 58 | 7.07E-19 | – | |
| PANTHER | 322 | 381 | 60 | 2.90E-230 | – | |
| Gene3D | 322 | 371 | 50 | 1.10E-17 | ||
| PANTHER | 322 | 381 | 60 | 2.90E-230 | – | |
| Pfam | 326 | 368 | 43 | 5.70E-13 | ||
| CDD | 326 | 371 | 46 | 6.51E-11 | – | |
| ProSiteProfiles | 327 | 368 | 42 | 12.519 | ||
| SMART | 327 | 367 | 41 | 2.20E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj2g3v2017390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2017390.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.