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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003956
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We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.588s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0209729.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-5-like [Cicer arietinum] gi|502151779|ref|XP_004508609.1| chr0 105223745 105224394 -
2 domain predictions
3 GO terms
Lj2g3v2087990.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-6 [Glycine max] gi|356576945|ref|XP_003556590.1| chr2 31420077 31420525 +
2 domain predictions
3 GO terms
Lj4g3v2365210.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max] gi|356532577|ref|XP_003534848.1| chr4 32510084 32511093 +
2 domain predictions
3 GO terms
Lj4g3v2799410.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max] gi|356511129|ref|XP_003524282.1| chr4 37445225 37446323 -
2 domain predictions
3 GO terms
Lj4g3v2825520.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max] gi|356511186|ref|XP_003524310.1| chr4 37802801 37803454 +
2 domain predictions
3 GO terms
Lj6g3v1584620.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-8-like [Glycine max] gi|356537473|ref|XP_003537251.1| chr6 17906294 17907275 -
2 domain predictions
3 GO terms
Lj6g3v1720580.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-3-like [Glycine max] gi|356555763|ref|XP_003546199.1| chr6 19473192 19475372 -
2 domain predictions
3 GO terms
Lj6g3v1720580.2
n.a. PREDICTED: nuclear transcription factor Y subunit B-3-like [Glycine max] gi|356555763|ref|XP_003546199.1| chr6 19473192 19475372 -
2 domain predictions
3 GO terms
LotjaGi1g1v0016000.1
n.a. Nuclear transcription factor Y protein; TAIR: AT4G14540.1 nuclear factor Y, subunit B3; Swiss-Prot: sp|Q75IZ7|NFYB8_ORYSJ Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0L9VBC0|A0A0L9VBC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0016000 LjG1.1_chr1 2046304 2050334 -
2 domain predictions
3 GO terms
LotjaGi1g1v0321200.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G13570.1 nuclear factor Y, subunit B7; Swiss-Prot: sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7; TrEMBL-Plants: tr|I1K511|I1K511_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321200 LjG1.1_chr1 77165065 77166947 +
2 domain predictions
3 GO terms
LotjaGi1g1v0694000_LC.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0L9U847|A0A0L9U847_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
2 domain predictions
3 GO terms
LotjaGi1g1v0694000_LC.2
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0B2PJ97|A0A0B2PJ97_GLYSO Nuclear transcription factor Y subunit B-8; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
2 domain predictions
3 GO terms
LotjaGi1g1v0694000_LC.3
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
2 domain predictions
3 GO terms
LotjaGi1g1v0694000_LC.4
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
2 domain predictions
3 GO terms
LotjaGi2g1v0439900.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT1G21970.1 Histone superfamily protein; Swiss-Prot: sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9; TrEMBL-Plants: tr|I1NCV5|I1NCV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0439900 LjG1.1_chr2 93650365 93651025 +
2 domain predictions
3 GO terms
LotjaGi4g1v0005900.1
n.a. Nuclear transcription factor Y protein; TAIR: AT5G47670.1 nuclear factor Y, subunit B6; Swiss-Prot: sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6; TrEMBL-Plants: tr|B5KMT1|B5KMT1_9FABA Transcription factor LEC1-B; Found in the gene: LotjaGi4g1v0005900 LjG1.1_chr4 913342 916133 -
2 domain predictions
3 GO terms
LotjaGi4g1v0343900.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G47810.1 nuclear factor Y, subunit B5; Swiss-Prot: sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5; TrEMBL-Plants: tr|A0A0B2QYD6|A0A0B2QYD6_GLYSO Nuclear transcription factor Y subunit B-5; Found in the gene: LotjaGi4g1v0343900 LjG1.1_chr4 72373176 72374451 +
2 domain predictions
3 GO terms
LotjaGi4g1v0402200.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT4G14540.1 nuclear factor Y, subunit B3; Swiss-Prot: sp|Q0J7P4|HD5_ORYSJ Nuclear transcription factor Y subunit B-11; TrEMBL-Plants: tr|A0A0B2S259|A0A0B2S259_GLYSO Nuclear transcription factor Y subunit B-3; Found in the gene: LotjaGi4g1v0402200 LjG1.1_chr4 77944876 77946291 +
2 domain predictions
3 GO terms
LotjaGi4g1v0410500.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G13570.1 nuclear factor Y, subunit B7; Swiss-Prot: sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7; TrEMBL-Plants: tr|I1K511|I1K511_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410500 LjG1.1_chr4 78655077 78656390 +
2 domain predictions
3 GO terms
LotjaGi5g1v0074500.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074500 LjG1.1_chr5 12353375 12358538 +
2 domain predictions
3 GO terms
LotjaGi5g1v0074500.2
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074500 LjG1.1_chr5 12353375 12358538 +
2 domain predictions
3 GO terms
LotjaGi5g1v0074500.3
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A1J7GR83|A0A1J7GR83_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074500 LjG1.1_chr5 12353635 12354270 +
2 domain predictions
3 GO terms
LotjaGi5g1v0161200.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G38880.10 nuclear factor Y, subunit B1; Swiss-Prot: sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1; TrEMBL-Plants: tr|B9SD43|B9SD43_RICCO Ccaat-binding transcription factor subunit A, putative; Found in the gene: LotjaGi5g1v0161200 LjG1.1_chr5 41408728 41414844 -
2 domain predictions
3 GO terms
LotjaGi5g1v0161200.2
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|E0WC42|E0WC42_SOYBN CCAAT-binding transcription factor family protein; Found in the gene: LotjaGi5g1v0161200 LjG1.1_chr5 41408728 41414844 -
2 domain predictions
3 GO terms
LotjaGi5g1v0161200.3
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|E0WC42|E0WC42_SOYBN CCAAT-binding transcription factor family protein; Found in the gene: LotjaGi5g1v0161200 LjG1.1_chr5 41409108 41414811 -
2 domain predictions
3 GO terms
LotjaGi5g1v0161200.4
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0B2NVD4|A0A0B2NVD4_GLYSO Nuclear transcription factor Y subunit B-8; Found in the gene: LotjaGi5g1v0161200 LjG1.1_chr5 41412956 41414430 -
2 domain predictions
3 GO terms
LotjaGi5g1v0161200.5
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G38880.10 nuclear factor Y, subunit B1; Swiss-Prot: sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1; TrEMBL-Plants: tr|A0A0R0I2W3|A0A0R0I2W3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0161200 LjG1.1_chr5 41413024 41414430 -
2 domain predictions
3 GO terms
LotjaGi6g1v0143300.1
n.a. Nuclear transcription factor Y protein; TAIR: AT4G14540.1 nuclear factor Y, subunit B3; Swiss-Prot: sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3; TrEMBL-Plants: tr|A0A0L9VBC0|A0A0L9VBC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0143300 LjG1.1_chr6 41322248 41324151 -
2 domain predictions
3 GO terms
LotjaGi6g1v0248200.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G47810.1 nuclear factor Y, subunit B5; Swiss-Prot: sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5; TrEMBL-Plants: tr|I3TAX6|I3TAX6_MEDTR Nuclear transcription factor Y subunit B18; Found in the gene: LotjaGi6g1v0248200 LjG1.1_chr6 56031243 56032005 -
2 domain predictions
3 GO terms