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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2102980 |
| Transcript ID | Lj2g3v2102980.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357499777|ref|XP_003620177.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 370 | 370 | 2.00E-199 | – | |
| PANTHER | 1 | 370 | 370 | 2.00E-199 | – | |
| Pfam | 21 | 69 | 49 | 8.70E-18 | ||
| ProSiteProfiles | 22 | 56 | 35 | 11.948 | ||
| SUPERFAMILY | 22 | 166 | 145 | 3.60E-06 | ||
| TIGRFAM | 24 | 58 | 35 | 1.60E-08 | ||
| ProSiteProfiles | 57 | 91 | 35 | 10.687 | ||
| TIGRFAM | 59 | 93 | 35 | 2.00E-07 | ||
| Pfam | 88 | 119 | 32 | 5.80E-11 | ||
| ProSiteProfiles | 92 | 126 | 35 | 11.992 | ||
| TIGRFAM | 94 | 128 | 35 | 7.40E-08 | ||
| Gene3D | 100 | 365 | 266 | 2.40E-06 | ||
| Pfam | 126 | 175 | 50 | 3.10E-18 | ||
| ProSiteProfiles | 127 | 161 | 35 | 12.003 | ||
| TIGRFAM | 129 | 163 | 35 | 1.40E-08 | ||
| ProSiteProfiles | 162 | 196 | 35 | 12.934 | ||
| TIGRFAM | 165 | 198 | 34 | 3.10E-11 | ||
| Pfam | 196 | 245 | 50 | 1.20E-20 | ||
| ProSiteProfiles | 197 | 231 | 35 | 13.822 | ||
| TIGRFAM | 199 | 233 | 35 | 6.80E-11 | ||
| SUPERFAMILY | 201 | 259 | 59 | 3.60E-06 | ||
| ProSiteProfiles | 232 | 266 | 35 | 12.704 | ||
| TIGRFAM | 234 | 268 | 35 | 1.80E-09 | ||
| ProSiteProfiles | 267 | 301 | 35 | 11.389 | ||
| TIGRFAM | 269 | 302 | 34 | 1.10E-04 | ||
| Pfam | 271 | 315 | 45 | 6.80E-12 | ||
| ProSiteProfiles | 302 | 336 | 35 | 13.691 | ||
| TIGRFAM | 305 | 338 | 34 | 1.30E-11 | ||
| Pfam | 332 | 364 | 33 | 8.70E-10 | ||
| ProSiteProfiles | 337 | 370 | 34 | 11.257 | ||
| TIGRFAM | 339 | 369 | 31 | 3.80E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v2102980.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2102980.4, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.