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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2124280 |
| Transcript ID | Lj2g3v2124280.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like [Glycine max] gi|356540375|ref|XP_003538665.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 31 | 31 | – | – | |
| MobiDBLite | 15 | 63 | 49 | – | – | |
| PANTHER | 19 | 38 | 20 | 0 | – | |
| PANTHER | 19 | 38 | 20 | 0 | – | |
| PANTHER | 63 | 88 | 26 | 0 | – | |
| PANTHER | 63 | 88 | 26 | 0 | – | |
| PANTHER | 105 | 116 | 12 | 0 | – | |
| PANTHER | 105 | 116 | 12 | 0 | – | |
| PANTHER | 195 | 221 | 27 | 0 | – | |
| PANTHER | 195 | 221 | 27 | 0 | – | |
| Gene3D | 227 | 268 | 42 | 4.50E-12 | ||
| ProSiteProfiles | 251 | 285 | 35 | 12.222 | ||
| Pfam | 252 | 296 | 45 | 1.30E-10 | ||
| TIGRFAM | 254 | 286 | 33 | 2.30E-08 | ||
| PANTHER | 256 | 571 | 316 | 0 | – | |
| PANTHER | 256 | 571 | 316 | 0 | – | |
| ProSiteProfiles | 286 | 322 | 37 | 10.293 | ||
| Pfam | 311 | 370 | 60 | 6.60E-16 | ||
| ProSiteProfiles | 323 | 357 | 35 | 12.715 | ||
| TIGRFAM | 325 | 358 | 34 | 2.60E-09 | ||
| Gene3D | 326 | 522 | 197 | 4.50E-12 | ||
| ProSiteProfiles | 358 | 392 | 35 | 12.31 | ||
| TIGRFAM | 361 | 394 | 34 | 1.80E-07 | ||
| ProSiteProfiles | 393 | 427 | 35 | 11.159 | ||
| TIGRFAM | 395 | 428 | 34 | 5.00E-06 | ||
| Pfam | 395 | 425 | 31 | 4.00E-06 | ||
| Pfam | 428 | 475 | 48 | 1.30E-15 | ||
| ProSiteProfiles | 428 | 462 | 35 | 13.219 | ||
| TIGRFAM | 431 | 464 | 34 | 5.30E-09 | ||
| ProSiteProfiles | 463 | 497 | 35 | 11.915 | ||
| TIGRFAM | 465 | 498 | 34 | 1.80E-06 | ||
| Pfam | 486 | 542 | 57 | 1.40E-09 | ||
| ProSiteProfiles | 498 | 532 | 35 | 12.101 | ||
| TIGRFAM | 500 | 533 | 34 | 6.00E-07 | ||
| ProSiteProfiles | 533 | 567 | 35 | 10.665 | ||
| TIGRFAM | 536 | 569 | 34 | 4.10E-05 | ||
| ProSiteProfiles | 568 | 598 | 31 | 6.971 | ||
| Gene3D | 578 | 839 | 262 | 9.70E-10 | ||
| ProSiteProfiles | 634 | 664 | 31 | 6.807 | ||
| ProSiteProfiles | 704 | 738 | 35 | 9.416 | ||
| Pfam | 705 | 750 | 46 | 0.0038 | ||
| TIGRFAM | 708 | 740 | 33 | 0.0019 | ||
| ProSiteProfiles | 739 | 773 | 35 | 8.024 | ||
| ProSiteProfiles | 775 | 809 | 35 | 6.555 | ||
| PANTHER | 779 | 848 | 70 | 0 | – | |
| PANTHER | 779 | 848 | 70 | 0 | – | |
| ProSiteProfiles | 810 | 844 | 35 | 11.137 | ||
| Pfam | 813 | 841 | 29 | 9.10E-05 | ||
| TIGRFAM | 813 | 845 | 33 | 2.40E-04 | ||
| ProSiteProfiles | 845 | 879 | 35 | 6.807 | ||
| Pfam | 868 | 926 | 59 | 0.01 | ||
| ProSiteProfiles | 880 | 914 | 35 | 8.517 | ||
| ProSiteProfiles | 915 | 949 | 35 | 9.394 | ||
| TIGRFAM | 918 | 950 | 33 | 1.80E-04 | ||
| ProSiteProfiles | 950 | 984 | 35 | 7.322 | ||
| PANTHER | 954 | 1096 | 143 | 0 | – | |
| PANTHER | 954 | 1096 | 143 | 0 | – | |
| Pfam | 984 | 1032 | 49 | 7.10E-10 | ||
| ProSiteProfiles | 985 | 1019 | 35 | 12.814 | ||
| Gene3D | 986 | 1161 | 176 | 7.30E-08 | ||
| TIGRFAM | 988 | 1019 | 32 | 6.70E-07 | ||
| ProSiteProfiles | 1020 | 1054 | 35 | 10.106 | ||
| TIGRFAM | 1023 | 1055 | 33 | 1.20E-05 | ||
| Pfam | 1043 | 1103 | 61 | 5.50E-05 | ||
| ProSiteProfiles | 1055 | 1089 | 35 | 9.931 | ||
| ProSiteProfiles | 1090 | 1124 | 35 | 8.418 | ||
| ProSiteProfiles | 1125 | 1159 | 35 | 11.323 | ||
| TIGRFAM | 1129 | 1160 | 32 | 7.20E-06 | ||
| Pfam | 1129 | 1154 | 26 | 1.10E-04 | ||
| ProSiteProfiles | 1160 | 1194 | 35 | 5.623 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v2124280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2124280.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.