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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2124290 |
| Transcript ID | Lj2g3v2124290.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Glycine max] gi|356540373|ref|XP_003538664.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 73 | 509 | 437 | 2.30E-194 | – | |
| PANTHER | 73 | 509 | 437 | 2.30E-194 | – | |
| Gene3D | 76 | 142 | 67 | 1.10E-15 | ||
| ProSiteProfiles | 76 | 110 | 35 | 10.589 | ||
| TIGRFAM | 80 | 111 | 32 | 1.40E-05 | ||
| Pfam | 98 | 155 | 58 | 2.00E-08 | ||
| ProSiteProfiles | 111 | 145 | 35 | 10.918 | ||
| TIGRFAM | 113 | 145 | 33 | 3.00E-05 | ||
| ProSiteProfiles | 146 | 180 | 35 | 8.649 | ||
| TIGRFAM | 149 | 178 | 30 | 4.30E-04 | ||
| ProSiteProfiles | 181 | 215 | 35 | 10.26 | ||
| TIGRFAM | 184 | 216 | 33 | 3.50E-06 | ||
| Pfam | 184 | 223 | 40 | 3.50E-07 | ||
| Gene3D | 214 | 455 | 242 | 1.10E-15 | ||
| ProSiteProfiles | 216 | 250 | 35 | 9.186 | ||
| TIGRFAM | 219 | 252 | 34 | 0.0022 | ||
| SUPERFAMILY | 227 | 457 | 231 | 2.88E-07 | – | |
| ProSiteProfiles | 251 | 285 | 35 | 12.693 | ||
| Pfam | 254 | 283 | 30 | 5.90E-06 | ||
| TIGRFAM | 254 | 287 | 34 | 1.30E-08 | ||
| Pfam | 285 | 322 | 38 | 5.20E-13 | ||
| ProSiteProfiles | 286 | 320 | 35 | 13.23 | ||
| TIGRFAM | 288 | 321 | 34 | 5.60E-11 | ||
| ProSiteProfiles | 321 | 355 | 35 | 8.758 | ||
| TIGRFAM | 325 | 352 | 28 | 5.20E-04 | ||
| Pfam | 325 | 352 | 28 | 0.065 | ||
| ProSiteProfiles | 356 | 390 | 35 | 6.763 | ||
| ProSiteProfiles | 391 | 425 | 35 | 9.712 | ||
| TIGRFAM | 394 | 427 | 34 | 5.60E-04 | ||
| Pfam | 395 | 423 | 29 | 0.0066 | ||
| Pfam | 425 | 473 | 49 | 1.80E-13 | ||
| ProSiteProfiles | 426 | 460 | 35 | 11.553 | ||
| TIGRFAM | 429 | 461 | 33 | 1.00E-07 | ||
| ProSiteProfiles | 461 | 495 | 35 | 11.509 | ||
| TIGRFAM | 463 | 496 | 34 | 2.80E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v2124290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2124290.1, powered by CORGI.
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