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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2124440 |
| Transcript ID | Lj2g3v2124440.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g71420-like [Glycine max] gi|356495756|ref|XP_003516739.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 33 | 27 | 0 | – | |
| PANTHER | 7 | 33 | 27 | 0 | – | |
| Gene3D | 45 | 136 | 92 | 2.50E-08 | ||
| SUPERFAMILY | 72 | 150 | 79 | 2.66E-06 | ||
| ProSiteProfiles | 72 | 106 | 35 | 6.566 | ||
| PANTHER | 92 | 633 | 542 | 0 | – | |
| PANTHER | 92 | 633 | 542 | 0 | – | |
| ProSiteProfiles | 109 | 143 | 35 | 9.591 | ||
| TIGRFAM | 114 | 142 | 29 | 6.30E-04 | ||
| Pfam | 114 | 141 | 28 | 0.0044 | ||
| Pfam | 142 | 165 | 24 | 1.00E-04 | ||
| ProSiteProfiles | 248 | 282 | 35 | 8.813 | ||
| Pfam | 250 | 280 | 31 | 0.0025 | ||
| Pfam | 358 | 404 | 47 | 3.80E-07 | ||
| ProSiteProfiles | 358 | 391 | 34 | 6.577 | ||
| ProSiteProfiles | 392 | 426 | 35 | 5.93 | ||
| Gene3D | 392 | 393 | 2 | 2.50E-08 | ||
| ProSiteProfiles | 427 | 461 | 35 | 9.328 | ||
| Pfam | 432 | 456 | 25 | 0.0053 | ||
| TIGRFAM | 432 | 459 | 28 | 0.0011 | ||
| Pfam | 460 | 485 | 26 | 1.30E-05 | ||
| TIGRFAM | 460 | 485 | 26 | 8.80E-04 | ||
| Gene3D | 461 | 612 | 152 | 2.50E-08 | ||
| ProSiteProfiles | 462 | 488 | 27 | 5.842 | ||
| SUPERFAMILY | 466 | 629 | 164 | 2.66E-06 | ||
| ProSiteProfiles | 490 | 525 | 36 | 9.482 | ||
| TIGRFAM | 493 | 525 | 33 | 3.70E-05 | ||
| Pfam | 493 | 519 | 27 | 7.80E-04 | ||
| ProSiteProfiles | 526 | 556 | 31 | 7.136 | ||
| Pfam | 530 | 554 | 25 | 0.063 | ||
| ProSiteProfiles | 558 | 588 | 31 | 5.908 | ||
| ProSiteProfiles | 592 | 626 | 35 | 6.522 | ||
| Pfam | 628 | 756 | 129 | 5.10E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj2g3v2124440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2124440.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.