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Lj2g3v2172980.1

Overview

Field Value
Gene ID Lj2g3v2172980
Transcript ID Lj2g3v2172980.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Glycine max] gi|356551817|ref|XP_003544270.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF56112
1 277 277 1.89E-83
IPR011009
ProSiteProfiles
PS50011
1 229 229 44.753
IPR000719
SMART
SM00220
1 229 229 2.80E-81
IPR000719
Pfam
PF00069
1 229 229 2.10E-65
IPR000719
PANTHER
PTHR24351:SF80
1 288 288 1.50E-203 –
Gene3D
G3DSA:3.30.200.20
1 55 55 3.00E-17 –
CDD
cd05123
1 229 229 1.46E-132 –
Phobius
CYTOPLASMIC_DOMAIN
1 43 43 – –
PANTHER
PTHR24351
1 288 288 1.50E-203 –
Phobius
TRANSMEMBRANE
44 63 20 – –
Gene3D
G3DSA:1.10.510.10
56 281 226 8.00E-69 –
Phobius
NON_CYTOPLASMIC_DOMAIN
64 294 231 – –
ProSitePatterns
PS00108
92 104 13 –
IPR008271
ProSiteProfiles
PS51285
230 294 65 12.994
IPR000961
SMART
SM00133
230 290 61 1.20E-10
IPR000961
MobiDBLite
mobidb-lite
269 294 26 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0004674
Molecular function Protein serine/threonine kinase activity Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v2172980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2172980.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.