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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2278550 |
| Transcript ID | Lj2g3v2278550.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Glycine max] gi|356551872|ref|XP_003544296.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 24 | 20 | 0 | – | |
| PANTHER | 5 | 24 | 20 | 0 | – | |
| PANTHER | 46 | 52 | 7 | 0 | – | |
| PANTHER | 46 | 52 | 7 | 0 | – | |
| ProSiteProfiles | 50 | 84 | 35 | 5.536 | ||
| PANTHER | 106 | 326 | 221 | 0 | – | |
| PANTHER | 106 | 326 | 221 | 0 | – | |
| ProSiteProfiles | 119 | 149 | 31 | 9.46 | ||
| SUPERFAMILY | 125 | 277 | 153 | 7.05E-05 | ||
| TIGRFAM | 125 | 150 | 26 | 1.30E-04 | ||
| Pfam | 126 | 150 | 25 | 4.10E-05 | ||
| ProSiteProfiles | 150 | 184 | 35 | 12.211 | ||
| Pfam | 152 | 182 | 31 | 6.40E-07 | ||
| TIGRFAM | 152 | 186 | 35 | 1.10E-08 | ||
| ProSiteProfiles | 185 | 219 | 35 | 6.401 | ||
| ProSiteProfiles | 220 | 250 | 31 | 7.399 | ||
| Pfam | 225 | 250 | 26 | 0.006 | ||
| Gene3D | 228 | 304 | 77 | 1.50E-12 | ||
| Pfam | 251 | 289 | 39 | 1.20E-11 | ||
| ProSiteProfiles | 251 | 285 | 35 | 14.316 | ||
| TIGRFAM | 253 | 285 | 33 | 3.40E-10 | ||
| SUPERFAMILY | 262 | 350 | 89 | 1.02E-07 | – | |
| ProSiteProfiles | 286 | 320 | 35 | 10.983 | ||
| TIGRFAM | 288 | 322 | 35 | 3.90E-06 | ||
| Pfam | 320 | 366 | 47 | 1.50E-08 | ||
| ProSiteProfiles | 321 | 355 | 35 | 12.222 | ||
| TIGRFAM | 323 | 356 | 34 | 4.00E-07 | ||
| SUPERFAMILY | 390 | 519 | 130 | 1.02E-07 | – | |
| ProSiteProfiles | 391 | 421 | 31 | 9.624 | ||
| Gene3D | 394 | 532 | 139 | 1.50E-12 | ||
| TIGRFAM | 396 | 423 | 28 | 0.0021 | ||
| PANTHER | 397 | 648 | 252 | 0 | – | |
| PANTHER | 397 | 648 | 252 | 0 | – | |
| ProSiteProfiles | 422 | 456 | 35 | 11.816 | ||
| Pfam | 422 | 458 | 37 | 2.10E-08 | ||
| TIGRFAM | 424 | 458 | 35 | 5.40E-07 | ||
| ProSiteProfiles | 457 | 491 | 35 | 10.665 | ||
| Pfam | 459 | 488 | 30 | 7.50E-06 | ||
| TIGRFAM | 459 | 488 | 30 | 0.0011 | ||
| Pfam | 493 | 540 | 48 | 8.30E-10 | ||
| ProSiteProfiles | 493 | 527 | 35 | 11.542 | ||
| TIGRFAM | 496 | 528 | 33 | 1.30E-05 | ||
| ProSiteProfiles | 563 | 593 | 31 | 5.941 | ||
| Pfam | 568 | 588 | 21 | 0.83 | ||
| Pfam | 593 | 640 | 48 | 1.10E-09 | ||
| ProSiteProfiles | 594 | 628 | 35 | 12.485 | ||
| TIGRFAM | 596 | 629 | 34 | 2.80E-08 | ||
| ProSiteProfiles | 629 | 648 | 20 | 5.667 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v2278550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2278550.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.