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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2379070 |
| Transcript ID | Lj2g3v2379070.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pseudouridylate synthase [Medicago truncatula] gi|357491363|ref|XP_003615969.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 17 | 17 | – | – | |
| Phobius | 1 | 16 | 16 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 2 | 10 | 9 | – | – | |
| Phobius | 11 | 16 | 6 | – | – | |
| Phobius | 17 | 498 | 482 | – | – | |
| PANTHER | 48 | 237 | 190 | 1.50E-188 | ||
| PANTHER | 48 | 237 | 190 | 1.50E-188 | – | |
| Gene3D | 60 | 182 | 123 | 1.30E-19 | ||
| SUPERFAMILY | 61 | 241 | 181 | 5.32E-30 | ||
| CDD | 64 | 408 | 345 | 1.81E-79 | – | |
| Gene3D | 185 | 239 | 55 | 1.20E-27 | ||
| MobiDBLite | 235 | 302 | 68 | – | – | |
| Pfam | 321 | 401 | 81 | 6.40E-06 | ||
| PANTHER | 323 | 493 | 171 | 1.50E-188 | ||
| PANTHER | 323 | 493 | 171 | 1.50E-188 | – | |
| SUPERFAMILY | 324 | 408 | 85 | 2.01E-12 | ||
| Gene3D | 326 | 408 | 83 | 1.20E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of Lj2g3v2379070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2379070.1, powered by CORGI.
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