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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2587680 |
| Transcript ID | Lj2g3v2587680.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: AP3-complex subunit beta-A-like [Glycine max] gi|356501063|ref|XP_003519348.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 169 | 169 | 1.00E-173 | ||
| PANTHER | 1 | 169 | 169 | 1.00E-173 | ||
| Pfam | 2 | 165 | 164 | 1.00E-18 | ||
| Gene3D | 2 | 173 | 172 | 1.80E-22 | ||
| SUPERFAMILY | 4 | 164 | 161 | 1.20E-13 | ||
| PANTHER | 185 | 317 | 133 | 1.00E-173 | ||
| PANTHER | 185 | 317 | 133 | 1.00E-173 | ||
| MobiDBLite | 246 | 302 | 57 | – | – | |
| SMART | 331 | 485 | 155 | 1.20E-25 | ||
| PANTHER | 367 | 612 | 246 | 1.00E-173 | ||
| PANTHER | 367 | 612 | 246 | 1.00E-173 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Membrane coat | Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. | ||
| Cellular component | AP-3 adaptor complex | A heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. AP-3 does not appear to associate with clathrin in all organisms. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B). |
Expression pattern of Lj2g3v2587680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2587680.1, powered by CORGI.
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