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Lj2g3v2646180.1

Overview

Field Value
Gene ID Lj2g3v2646180
Transcript ID Lj2g3v2646180.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22870
13 214 202 7.00E-138 –
PANTHER
PTHR22870:SF204
13 214 202 7.00E-138 –
Gene3D
G3DSA:2.130.10.30
13 215 203 8.60E-56
IPR009091
SUPERFAMILY
SSF50985
14 49 36 3.66E-51
IPR009091
Pfam
PF00415
16 92 77 1.90E-07
IPR000408
ProSiteProfiles
PS50012
16 95 80 13.057
IPR000408
PRINTS
PR00633
18 34 17 2.90E-05
IPR000408
SUPERFAMILY
SSF50985
79 215 137 3.66E-51
IPR009091
ProSitePatterns
PS00626
82 92 11 –
IPR000408
ProSiteProfiles
PS50012
96 147 52 12.393
IPR000408
Pfam
PF00415
96 143 48 2.70E-10
IPR000408
PRINTS
PR00633
134 150 17 2.90E-05
IPR000408
Pfam
PF00415
147 197 51 1.70E-13
IPR000408
ProSiteProfiles
PS50012
148 201 54 14.866
IPR000408
PRINTS
PR00633
150 164 15 2.90E-05
IPR000408
ProSitePatterns
PS00626
188 198 11 –
IPR000408

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj2g3v2646180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2646180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.