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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2831890 |
| Transcript ID | Lj2g3v2831890.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | DNA repair and recombination protein RAD54-like protein [Medicago truncatula] gi|357492817|ref|XP_003616697.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 263 | 288 | 26 | – | – | |
| MobiDBLite | 521 | 549 | 29 | – | – | |
| MobiDBLite | 574 | 611 | 38 | – | – | |
| PANTHER | 600 | 697 | 98 | 1.30E-276 | – | |
| PANTHER | 600 | 697 | 98 | 1.30E-276 | – | |
| SUPERFAMILY | 701 | 991 | 291 | 5.22E-31 | ||
| PANTHER | 728 | 977 | 250 | 1.30E-276 | – | |
| PANTHER | 728 | 977 | 250 | 1.30E-276 | – | |
| Gene3D | 740 | 963 | 224 | 2.50E-11 | ||
| SMART | 741 | 982 | 242 | 4.40E-17 | ||
| Pfam | 759 | 994 | 236 | 1.10E-16 | ||
| ProSiteProfiles | 770 | 970 | 201 | 15.13 | ||
| CDD | 778 | 952 | 175 | 1.08E-08 | – | |
| PANTHER | 1006 | 1313 | 308 | 1.30E-276 | – | |
| PANTHER | 1006 | 1313 | 308 | 1.30E-276 | – | |
| SUPERFAMILY | 1046 | 1311 | 266 | 1.95E-37 | ||
| CDD | 1111 | 1254 | 144 | 2.46E-16 | – | |
| Gene3D | 1128 | 1254 | 127 | 3.10E-14 | ||
| Pfam | 1129 | 1245 | 117 | 2.20E-15 | ||
| ProSiteProfiles | 1135 | 1293 | 159 | 12.237 | ||
| SMART | 1161 | 1246 | 86 | 9.00E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj2g3v2831890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2831890.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.