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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3084320 |
| Transcript ID | Lj2g3v3084320.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | NAC domain protein IPR003441 [Medicago truncatula] gi|357494187|ref|XP_003617382.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 91 | 64 | 3.80E-28 | – | |
| PANTHER | 28 | 91 | 64 | 3.80E-28 | – | |
| SUPERFAMILY | 46 | 95 | 50 | 2.09E-13 | ||
| ProSiteProfiles | 47 | 202 | 156 | 11.89 | ||
| Pfam | 49 | 93 | 45 | 3.30E-08 | ||
| SMART | 100 | 208 | 109 | 1.00E-04 | ||
| Gene3D | 102 | 219 | 118 | 4.00E-20 | – | |
| SUPERFAMILY | 102 | 162 | 61 | 1.33E-08 | ||
| Pfam | 102 | 162 | 61 | 1.30E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
Expression pattern of Lj2g3v3084320.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3084320.2, powered by CORGI.
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