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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3224210 |
| Transcript ID | Lj2g3v3224210.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Bactericidal permeability-increasing protein [Medicago truncatula] gi|357494733|ref|XP_003617655.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 489 | 489 | 9.40E-183 | ||
| Phobius | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 4 | 4 | – | – | |
| SignalP | 1 | 19 | 19 | – | – | |
| PANTHER | 1 | 489 | 489 | 9.40E-183 | – | |
| PIRSF | 5 | 482 | 478 | 2.30E-121 | ||
| Phobius | 5 | 14 | 10 | – | – | |
| Phobius | 15 | 19 | 5 | – | – | |
| Phobius | 20 | 501 | 482 | – | – | |
| SUPERFAMILY | 31 | 242 | 212 | 1.36E-34 | ||
| SMART | 33 | 258 | 226 | 1.60E-04 | ||
| Gene3D | 36 | 212 | 177 | 3.40E-33 | – | |
| Pfam | 37 | 210 | 174 | 7.70E-19 | ||
| Gene3D | 213 | 478 | 266 | 6.90E-66 | – | |
| SUPERFAMILY | 243 | 478 | 236 | 1.22E-37 | ||
| Pfam | 278 | 463 | 186 | 2.60E-24 | ||
| SMART | 280 | 474 | 195 | 8.30E-09 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular space | That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of Lj2g3v3224210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3224210.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.